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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:516.4 nTPM
FANTOM5:310.6 Scaled Tags Per Million
Pig:65.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046647
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 516.4
Samples: 246

Max nTPM: 1250.0
Min nTPM: 256.7
Std nTPM: 149.5
Median nTPM: 492.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1250.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1214.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1118.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1102.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1002.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1001.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 886.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 859.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 851.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 837.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 818.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 805.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 791.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 786.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 783.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 783.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 751.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 734.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 725.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 723.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 717.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 707.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 705.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 685.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 678.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 677.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 668.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 661.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 658.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 657.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 647.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 638.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 629.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 628.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 628.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 623.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 623.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 620.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 620.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 618.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 617.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 615.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 613.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 607.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 606.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 606.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 605.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 591.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 590.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 589.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 584.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 582.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 582.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 580.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 579.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 572.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 570.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 568.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 566.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 563.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 563.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 562.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 560.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 559.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 558.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 558.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 556.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 556.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 555.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 553.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 552.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 552.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 551.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 551.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 549.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 548.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 547.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 543.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 539.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 538.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 537.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 535.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 534.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 532.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 531.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 530.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 529.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 527.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 527.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 525.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 524.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 523.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 522.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 521.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 520.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 520.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 519.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 518.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 517.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 516.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 516.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 515.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 515.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 514.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 513.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 512.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 511.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 510.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 509.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 508.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 508.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 505.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 504.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 503.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 503.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 502.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 501.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 501.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 500.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 499.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 498.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 497.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 493.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 491.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 491.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 490.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 490.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 489.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 487.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 483.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 482.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 481.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 481.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 479.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 479.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 477.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 477.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 477.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 476.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 476.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 475.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 475.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 472.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 472.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 471.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 470.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 469.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 469.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 467.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 466.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 465.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 465.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 465.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 464.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 464.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 462.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 461.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 461.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 458.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 458.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 454.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 454.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 450.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 450.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 448.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 448.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 445.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 444.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 443.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 442.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 441.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 439.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 438.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 436.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 436.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 434.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 432.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 431.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 431.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 428.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 427.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 425.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 425.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 424.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 423.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 421.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 419.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 419.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 417.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 417.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 416.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 416.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 414.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 414.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 413.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 412.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 411.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 403.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 402.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 402.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 401.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 399.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 395.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 395.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 393.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 392.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 391.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 390.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 390.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 389.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 388.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 386.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 382.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 376.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 373.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 373.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 370.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 369.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 368.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 364.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 362.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 361.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 360.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 360.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 360.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 359.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 357.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 355.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 353.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 352.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 351.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 344.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 338.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 335.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 332.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 323.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 322.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 321.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 319.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 318.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 314.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 313.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 313.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 295.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 286.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 256.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

310.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 310.6
FF:10164-103B2 76 years, female 310.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.3
Pig sample Sample description nTPM
Caudate
nTPM: 65.3
Samples: 4

Max nTPM: 70.7
Min nTPM: 58.2
Sample A Female 70.7
Sample B Female 63.6
Sample C Male 68.6
Sample D Male 58.2

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