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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:521.7 nTPM
HPA:521.7 nTPM
GTEx:389.7 nTPM
FANTOM5:434.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046647
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

521.7
overview
Male, age 65
Small intestine sample 232
nTPM: 559.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 532.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 439.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 555.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

389.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 389.7
Samples: 187

Max nTPM: 711.5
Min nTPM: 171.3
Std nTPM: 115.2
Median nTPM: 365.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 711.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 702.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 686.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 656.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 651.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 645.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 641.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 622.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 611.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 596.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 589.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 588.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 583.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 576.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 572.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 568.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 566.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 557.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 556.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 544.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 544.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 541.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 540.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 540.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 518.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 517.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 512.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 511.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 510.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 509.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 509.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 505.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 505.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 503.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 501.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 496.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 495.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 493.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 492.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 485.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 479.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 477.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 477.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 476.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 475.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 475.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 474.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 468.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 462.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 461.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 460.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 455.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 452.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 450.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 449.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 448.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 447.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 445.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 442.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 438.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 437.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 437.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 430.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 430.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 428.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 428.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 427.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 424.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 422.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 422.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 421.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 418.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 415.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 414.9
GTEX-1192X-2526-SM-59868 50-59 years, male 413.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 411.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 410.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 409.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 407.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 397.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 395.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 393.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 392.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 389.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 388.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 386.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 384.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 380.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 379.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 371.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 368.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 366.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 365.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 365.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 363.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 363.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 363.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 362.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 362.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 360.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 360.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 359.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 359.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 358.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 354.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 353.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 353.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 353.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 352.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 352.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 349.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 349.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 345.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 344.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 342.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 337.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 335.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 334.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 331.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 330.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 327.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 322.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 322.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 318.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 317.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 316.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 313.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 312.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 309.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 309.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 308.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 307.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 305.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 305.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 304.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 302.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 301.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 299.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 298.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 296.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 295.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 295.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 294.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 293.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 292.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 287.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 285.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 285.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 284.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 284.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 282.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 282.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 281.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 280.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 274.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 270.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 270.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 267.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 265.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 265.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 263.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 263.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 261.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 260.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 257.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 256.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 254.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 254.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 251.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 251.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 250.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 250.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 248.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 248.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 246.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 246.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 244.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 240.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 240.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 240.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 231.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 225.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 225.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 214.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 204.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 190.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 171.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

434.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 434.0
FF:10024-101D6 15,40,85 years, mixed 434.0

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