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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:305.1 nTPM
GTEx:305.1 nTPM
FANTOM5:459.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046647
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 305.1
Samples: 156

Max nTPM: 733.7
Min nTPM: 196.7
Std nTPM: 67.0
Median nTPM: 295.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 733.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 454.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 438.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 435.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 424.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 417.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 414.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 406.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 404.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 399.9
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 398.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 396.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 392.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 391.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 390.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 389.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 384.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 384.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 383.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 383.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 380.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 378.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 375.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 370.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 369.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 368.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 368.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 366.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 365.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 364.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 361.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 358.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 357.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 355.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 353.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 351.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 349.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 348.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 345.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 344.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 344.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 344.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 341.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 341.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 337.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 335.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 334.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 333.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 332.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 332.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 329.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 327.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 321.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 320.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 317.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 316.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 315.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 312.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 312.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 311.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 311.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 310.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 310.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 309.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 307.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 307.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 304.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 303.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 303.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 300.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 300.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 300.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 299.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 298.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 298.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 297.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 297.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 296.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 294.9
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 294.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 292.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 292.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 292.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 290.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 290.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 287.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 285.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 284.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 283.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 278.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 277.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 276.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 276.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 275.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 275.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 274.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 273.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 273.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 273.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 272.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 272.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 272.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 270.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 270.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 269.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 269.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 268.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 267.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 264.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 263.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 262.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 262.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 261.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 261.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 261.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 260.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 260.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 259.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 259.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 256.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 256.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 255.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 254.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 253.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 253.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 252.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 251.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 248.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 248.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 246.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 245.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 245.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 244.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 244.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 243.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 239.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 239.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 237.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 234.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 230.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 229.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 228.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 227.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 226.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 222.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 222.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 222.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 220.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 219.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 219.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 215.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 213.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 209.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 204.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 200.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 196.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

459.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 459.6
FF:10204-103F6 68 years, female 459.6

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