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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.1 nTPM
HPA Brain:239.9 nTPM
GTEx:134.1 nTPM
FANTOM5:140.4 Scaled Tags Per Million
Pig:53.7 nTPM
Mouse:47.1 nTPM
Allen mouse:10.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.9
Sample id Sample description nTPM
Amygdala
nTPM: 210.7
2695 Female, age 67, right hemisphere 255.5
2517 Female, age 94, left hemisphere 224.8
2814 Male, age 76, right hemisphere 208.8
2514 Male, age 75, right hemisphere 187.1
1987 Female, age 91, left hemisphere 177.0
Basal amygdala
nTPM: 238.2
2609 Male, age 75, right hemisphere 275.4
2827 Female, age 67, right hemisphere 250.4
2110 Male, age 80, left hemisphere 234.3
2685 Female, age 94, left hemisphere 228.9
2243 Female, age 91, right hemisphere 226.1
1955 Male, age 76, both hemispheres 214.0
Central amygdala
nTPM: 239.9
2515 Male, age 75, right hemisphere 266.3
2239 Male, age 80, left hemisphere 251.9
2701 Female, age 91, right hemisphere 240.6
1905 Male, age 76, both hemispheres 226.9
2826 Female, age 94, left hemisphere 213.6
Corticomedial amygdala
nTPM: 213.3
2428 Male, age 75, right hemisphere 233.8
2535 Female, age 67, right hemisphere 227.1
2829 Male, age 80, left hemisphere 224.6
2429 Female, age 94, left hemisphere 210.6
2240 Male, age 76, both hemispheres 197.9
2242 Female, age 91, right hemisphere 185.9
Lateral amygdala
nTPM: 233.1
2256 Male, age 80, left hemisphere 256.8
2516 Male, age 75, right hemisphere 253.7
2830 Female, age 67, right hemisphere 243.2
2255 Female, age 91, right hemisphere 229.7
1883 Male, age 76, both hemispheres 211.0
2534 Female, age 94, left hemisphere 204.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.1
Samples: 152

Max nTPM: 274.1
Min nTPM: 57.7
Std nTPM: 35.9
Median nTPM: 129.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 274.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 247.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 234.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 233.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 219.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 209.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 204.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 202.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 200.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 184.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 180.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 180.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 180.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 175.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 175.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 173.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 172.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 171.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 170.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 170.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 169.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 169.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 167.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 166.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 166.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 164.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 163.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 162.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 159.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 159.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 158.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 157.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 157.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 154.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 153.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 152.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 152.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 152.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 149.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 148.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 147.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 147.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 146.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 146.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 145.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 145.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 144.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 144.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 142.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 140.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 138.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 138.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 137.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 136.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 135.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 135.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 135.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 135.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 135.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 134.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 133.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 132.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 131.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 131.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 131.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 130.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 130.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 126.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 126.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 126.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 126.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 125.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 124.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 124.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 123.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 123.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 122.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 121.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 121.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 121.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 120.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 118.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 118.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 117.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 117.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 117.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 116.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 116.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 116.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 116.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 115.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 115.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 114.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 114.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 113.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 112.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 111.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 111.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 111.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 111.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 110.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 109.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 109.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 109.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 107.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 107.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 104.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 104.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 103.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 102.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 102.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 101.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 100.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 99.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 97.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 95.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 94.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 87.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 80.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 79.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 77.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 75.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 74.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 72.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 71.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 66.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 65.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 58.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 57.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

140.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 140.4
FF:10151-102I7 76 years, female 140.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.7
Pig sample Sample description nTPM
Amygdala
nTPM: 53.7
Samples: 4

Max nTPM: 61.3
Min nTPM: 47.1
Sample A Female 47.1
Sample B Female 52.0
Sample C Male 54.3
Sample D Male 61.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 47.1
Samples: 4

Max nTPM: 52.5
Min nTPM: 44.7
Sample A Male 46.1
Sample B Male 45.0
Sample C Female 44.7
Sample D Female 52.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.5
69736400 Antisense, RP_050503_04_G01, Mouse strain C57BL/6J (56 days, male) 10.5

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