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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:190.6 nTPM
FANTOM5:195.5 Scaled Tags Per Million
Pig:71.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB011596
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

190.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 190.6
Samples: 246

Max nTPM: 440.6
Min nTPM: 95.0
Std nTPM: 57.4
Median nTPM: 177.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 440.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 428.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 415.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 415.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 375.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 354.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 332.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 319.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 308.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 307.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 306.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 301.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 296.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 295.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 294.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 289.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 288.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 286.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 285.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 280.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 275.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 268.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 268.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 266.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 264.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 264.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 258.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 258.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 256.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 251.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 250.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 250.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 249.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 245.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 245.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 244.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 242.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 241.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 238.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 235.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 232.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 231.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 231.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 230.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 229.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 228.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 227.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 226.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 226.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 225.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 224.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 223.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 222.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 222.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 221.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 221.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 221.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 220.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 219.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 217.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 216.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 216.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 215.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 211.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 211.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 211.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 211.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 210.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 209.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 208.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 208.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 205.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 205.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 204.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 204.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 203.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 203.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 202.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 202.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 201.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 200.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 199.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 199.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 199.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 198.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 197.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 196.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 196.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 196.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 196.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 195.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 194.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 193.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 191.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 191.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 191.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 190.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 188.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 187.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 187.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 187.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 187.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 186.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 186.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 186.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 186.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 185.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 185.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 185.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 185.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 184.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 184.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 184.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 183.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 183.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 179.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 179.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 179.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 179.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 178.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 178.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 178.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 177.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 177.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 177.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 177.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 176.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 176.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 175.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 175.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 174.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 174.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 174.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 174.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 174.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 174.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 174.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 173.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 171.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 171.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 170.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 168.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 168.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 167.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 167.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 166.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 166.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 166.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 166.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 165.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 164.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 164.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 164.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 163.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 163.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 162.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 162.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 162.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 162.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 162.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 161.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 161.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 160.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 160.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 160.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 158.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 158.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 158.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 157.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 157.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 157.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 156.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 156.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 156.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 155.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 155.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 155.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 154.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 154.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 153.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 153.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 153.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 152.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 152.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 151.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 151.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 151.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 151.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 150.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 150.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 150.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 149.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 149.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 149.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 149.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 148.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 148.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 148.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 147.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 146.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 146.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 145.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 144.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 144.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 144.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 143.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 143.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 142.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 142.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 142.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 139.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 139.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 136.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 136.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 136.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 135.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 134.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 133.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 133.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 133.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 132.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 132.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 131.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 131.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 130.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 130.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 128.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 127.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 126.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 125.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 125.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 124.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 123.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 120.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 120.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 118.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 118.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 116.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 114.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 111.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 110.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 104.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 103.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 95.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 195.5
FF:10164-103B2 76 years, female 195.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.6
Pig sample Sample description nTPM
Caudate
nTPM: 71.6
Samples: 4

Max nTPM: 80.3
Min nTPM: 65.4
Sample A Female 66.5
Sample B Female 65.4
Sample C Male 80.3
Sample D Male 74.2

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