MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.9 nTPM
HPA Brain:202.1 nTPM
GTEx:66.9 nTPM
FANTOM5:268.8 Scaled Tags Per Million
Pig:57.7 nTPM
Mouse:22.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 202.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.1
1830 Male, age 51, unknown 188.8
1833 Male, age 53, unknown 183.3
1870 Female, age 42, unknown 173.9
2411 Female, age 72, unknown 172.4
2019 Male, age 18, unknown 167.8
2586 Male, age 75, left hemisphere 165.8
2828 Female, age 72, unknown 151.3
2666 Male, age 74, left hemisphere 129.6
1827 Male, age 72, unknown 107.5
2219 Male, age 76, both hemispheres 80.6
Dorsal raphe nucleus
nTPM: 103.0
2750 Male, age 76, both hemispheres 162.0
1828 Male, age 53, unknown 110.9
2016 Female, age 72, unknown 108.8
2047 Male, age 72, unknown 72.0
2298 Female, age 72, unknown 61.4
Inferior colliculus
nTPM: 94.4
2849 Male, age 72, unknown 108.7
1848 Female, age 42, unknown 103.7
1890 Male, age 53, unknown 95.2
2097 Female, age 72, unknown 70.1
Median raphe nucleus
nTPM: 81.9
2220 Male, age 76, midline 81.9
Periaquaductal grey, anterior
nTPM: 90.7
2502 Female, age 75, unknown 95.6
1947 Male, age 18, unknown 94.7
1795 Male, age 51, unknown 81.9
Periaquaductal grey, dorsal
nTPM: 76.1
2464 Female, age 72, unknown 106.7
1831 Male, age 72, unknown 76.8
2850 Male, age 76, both hemispheres 72.9
1840 Male, age 53, unknown 48.1
Periaquaductal grey, lateral
nTPM: 86.1
2272 Male, age 74, both hemispheres 95.8
2053 Male, age 18, unknown 93.8
2140 Male, age 76, both hemispheres 68.6
Pretectal area
nTPM: 94.8
2407 Male, age 75, both hemispheres 130.9
1815 Male, age 53, unknown 130.4
2316 Male, age 76, right hemisphere 115.9
1817 Female, age 42, unknown 109.0
2825 Male, age 18, unknown 99.5
2007 Male, age 72, unknown 98.1
2667 Female, age 75, unknown 85.7
2273 Male, age 74, both hemispheres 81.5
2224 Female, age 72, unknown 72.6
1944 Female, age 72, unknown 61.5
1816 Male, age 51, unknown 57.6
Red nucleus
nTPM: 202.1
2769 Male, age 72, unknown 231.7
1904 Male, age 53, unknown 230.6
1865 Male, age 51, unknown 222.5
2227 Male, age 72, unknown 222.5
2785 Male, age 18, unknown 216.8
2823 Male, age 76, right hemisphere 210.5
1821 Female, age 72, unknown 199.4
2588 Male, age 74, left hemisphere 191.3
1954 Female, age 42, unknown 191.1
2503 Female, age 72, unknown 190.4
2584 Male, age 75, left hemisphere 170.1
2725 Female, age 75, unknown 148.5
Substantia nigra
nTPM: 106.1
2583 Male, age 75, right hemisphere 154.5
2590 Female, age 75, unknown 134.6
1851 Male, age 51, unknown 123.4
1889 Female, age 72, unknown 111.1
2699 Male, age 18, unknown 110.6
2409 Female, age 72, unknown 106.4
1941 Male, age 53, unknown 87.4
1916 Female, age 42, unknown 81.0
2665 Male, age 74, both hemispheres 78.4
2241 Male, age 72, unknown 73.3
Superior colliculus
nTPM: 122.8
1913 Female, age 42, unknown 184.3
1995 Male, age 72, unknown 182.2
1839 Male, age 51, unknown 131.1
1895 Male, age 76, right hemisphere 130.3
2668 Female, age 75, unknown 123.3
2587 Male, age 74, left hemisphere 117.1
2664 Male, age 75, both hemispheres 107.3
1796 Male, age 53, unknown 106.0
2087 Female, age 72, unknown 75.4
2261 Male, age 18, unknown 71.3
Ventral tegmental area
nTPM: 118.7
2223 Female, age 72, unknown 167.4
2410 Female, age 72, unknown 141.1
1942 Male, age 51, unknown 107.3
2218 Male, age 76, both hemispheres 101.5
1915 Female, age 42, unknown 97.5
2021 Male, age 53, unknown 97.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.9
Samples: 139

Max nTPM: 275.9
Min nTPM: 23.2
Std nTPM: 36.0
Median nTPM: 57.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 275.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 204.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 189.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 175.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 143.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 121.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 120.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 117.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 115.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 113.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 112.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 268.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 268.8
FF:10158-103A5 76 years, female 268.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 37.3
Sample A Female 55.4
Sample B Female 37.3
Sample C Male 57.2
Sample D Male 81.0
Midbrain
nTPM: 51.6
Samples: 4

Max nTPM: 72.3
Min nTPM: 37.8
Sample A Female 72.3
Sample B Female 54.0
Sample C Male 37.8
Sample D Male 42.1
Periaqueductal gray
nTPM: 43.8
Samples: 3

Max nTPM: 50.6
Min nTPM: 37.8
Sample B Female 50.6
Sample C Male 37.8
Sample D Male 43.1
Superior colliculi
nTPM: 50.2
Samples: 4

Max nTPM: 66.0
Min nTPM: 22.6
Sample A Female 62.4
Sample B Female 22.6
Sample C Male 49.8
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 24.0
Min nTPM: 18.7
Sample A Male 24.0
Sample B Male 23.8
Sample C Female 18.7
Sample D Female 23.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68342384 Antisense, RP_041214_01_C09, Mouse strain C57BL/6J (56 days, male) 0.5
70814345 Antisense, RP_050725_02_F12, Mouse strain C57BL/6J (56 days, male) 0.5

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