We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CDC42EP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CDC42EP1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:119.7 nTPM
HPA Brain:132.6 nTPM
GTEx:119.7 nTPM
FANTOM5:183.2 Scaled Tags Per Million
Pig:61.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 118.2
2194 Female, age 79, both hemispheres 132.1
2816 Male, age 47, midline 126.8
1981 Female, age 72, midline 117.4
2565 Male, age 75, midline 113.4
2048 Male, age 55, midline 101.1
Cervical spinal cord, dorsal horn
nTPM: 110.8
2173 Female, age 72, unknown 160.5
2296 Male, age 66, both hemispheres 156.1
1877 Male, age 55, unknown 101.9
2069 Male, age 47, both hemispheres 99.4
2721 Male, age 90, both hemispheres 80.6
2297 Male, age 75, both hemispheres 66.6
Cervical spinal cord, ventral horn
nTPM: 132.6
2068 Male, age 55, unknown 160.2
2820 Female, age 79, both hemispheres 160.2
2809 Male, age 90, both hemispheres 123.7
2480 Male, age 75, both hemispheres 118.5
2295 Male, age 66, both hemispheres 117.3
2098 Female, age 72, unknown 115.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 119.7
Samples: 159

Max nTPM: 237.0
Min nTPM: 28.6
Std nTPM: 40.1
Median nTPM: 116.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 237.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 222.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 217.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 207.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 206.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 197.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 194.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 193.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 192.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 191.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 186.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 185.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 183.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 178.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 173.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 173.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 172.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 171.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 169.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 168.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 165.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 165.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 163.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 163.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 162.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 159.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 159.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 157.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 157.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 156.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 155.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 154.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 154.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 153.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 150.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 149.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 148.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 147.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 146.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 146.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 144.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 144.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 139.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 139.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 137.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 137.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 136.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 135.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 131.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 130.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 129.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 128.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 126.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 126.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 126.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 125.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 125.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 125.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 124.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 123.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 123.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 123.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 122.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 121.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 120.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 120.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 119.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 119.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 118.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 115.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 114.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 114.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 113.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 113.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 111.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 111.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 111.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 111.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 111.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 109.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 107.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 106.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 106.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 106.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 105.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 105.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 104.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 104.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 103.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 100.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 98.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 97.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 97.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 96.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 96.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 96.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 95.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 95.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 92.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 89.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 89.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 89.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 88.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 88.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 87.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 86.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 84.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 83.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 83.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 81.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 81.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 80.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 79.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 79.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 78.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 78.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 77.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 76.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 74.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 74.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 74.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 73.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 73.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 70.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 70.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 62.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 61.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 61.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 60.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 60.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 58.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 57.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 56.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 56.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 46.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 28.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 183.2
FF:10181-103D1 60 years, female 226.2
FF:10159-103A6 76 years, female 140.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.9
Samples: 4

Max nTPM: 61.1
Min nTPM: 52.0
Sample A Female 52.6
Sample B Female 52.0
Sample C Male 53.8
Sample D Male 61.1
Ventral spinal cord
nTPM: 61.4
Samples: 4

Max nTPM: 69.8
Min nTPM: 54.0
Sample A Female 67.4
Sample B Female 54.2
Sample C Male 69.8
Sample D Male 54.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org