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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:157.0 nTPM
GTEx:157.0 nTPM
FANTOM5:296.4 Scaled Tags Per Million
Pig:145.5 nTPM
Mouse:352.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 157.0
Samples: 105

Max nTPM: 244.3
Min nTPM: 92.9
Std nTPM: 28.2
Median nTPM:
506_1 65 years, male 244.3
452_1 88 years, female 237.1
386_1 76 years, male 210.0
172_1 72 years, female 209.1
319_1 81 years, male 207.8
243_1 75 years, male 204.2
352_1 62 years, male 201.0
379_1 60 years, male 200.7
377_1 82 years, female 193.4
218_1 71 years, female 192.2
335_1 73 years, female 192.0
6_1 73 years, female 191.6
173_1 67 years, male 190.7
321_1 62 years, female 189.0
237_1 82 years, male 188.6
351_1 91 years, male 187.4
353_1 82 years, female 184.6
229_1 69 years, female 183.4
177_1 74 years, male 181.8
349_1 83 years, male 181.8
356_1 87 years, female 180.4
376_1 75 years, female 179.0
413_1 59 years, female 178.0
350_1 84 years, female 176.5
254_1 77 years, female 175.7
99_1 64 years, male 175.3
163_1 78 years, male 175.3
375_1 74 years, female 175.2
447_1 81 years, male 174.8
295_1 61 years, female 173.7
115_1 83 years, male 172.5
425_1 59 years, female 169.1
17_1 71 years, male 168.2
288_1 66 years, female 168.1
396_1 62 years, male 166.3
153_1 70 years, female 166.1
394_1 75 years, female 165.9
404_1 82 years, female 165.5
354_1 81 years, female 164.8
42_1 85 years, male 163.5
142_1 61 years, female 162.1
120_1 70 years, female 161.1
316_1 62 years, male 160.6
406_1 79 years, male 160.5
317_1 60 years, male 160.2
318_1 68 years, male 159.4
264_1 73 years, female 158.9
324_1 76 years, male 158.5
292_1 71 years, male 158.4
4_1 88 years, female 158.3
355_1 70 years, female 157.9
286_1 68 years, female 157.5
35_1 74 years, female 156.3
145_1 84 years, male 156.3
320_1 89 years, female 156.2
266_1 85 years, male 156.1
137_1 83 years, male 155.2
117_1 61 years, male 153.5
265_1 87 years, male 153.5
322_1 76 years, male 152.3
347_1 72 years, male 152.0
18_1 88 years, male 147.9
2_1 77 years, female 147.1
126_1 63 years, male 147.0
384_1 83 years, male 146.5
9_1 66 years, female 146.2
348_1 84 years, male 145.6
293_1 68 years, female 145.4
315_1 62 years, female 144.1
503_1 68 years, male 143.8
414_1 84 years, female 143.4
109_1 81 years, female 142.9
81_1 67 years, male 142.5
41_1 94 years, female 142.0
246_1 77 years, male 141.0
501_1 88 years, male 140.6
389_1 86 years, female 139.8
405_1 91 years, male 139.7
189_1 76 years, male 137.7
32_1 67 years, male 137.5
480_1 63 years, male 136.7
517_1 88 years, male 136.4
526_1 61 years, male 136.3
468_1 89 years, male 136.0
291_1 76 years, male 135.8
313_1 79 years, female 135.0
490_1 67 years, female 134.8
499_1 55 years, female 133.8
491_1 89 years, female 132.8
162_1 79 years, female 130.7
119_1 70 years, female 129.1
217_1 76 years, male 125.7
43_1 64 years, female 125.6
415_1 77 years, female 124.6
314_1 67 years, male 123.4
139_1 64 years, female 121.5
466_1 57 years, female 118.6
251_1 78 years, male 115.0
311_1 78 years, male 113.4
518_1 75 years, female 113.1
307_1 66 years, female 112.3
149_1 88 years, male 102.9
89_1 63 years, male 94.7
495_1 57 years, female 93.0
308_1 70 years, female 92.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

296.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 296.4
FF:10030-101E3 24-65 years, mixed 296.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.5
Pig sample Sample description nTPM
Retina
nTPM: 145.5
Samples: 4

Max nTPM: 166.4
Min nTPM: 135.8
Sample A Female 135.8
Sample B Female 166.4
Sample C Male 135.9
Sample D Male 143.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

352.2
Mouse sample Sample description nTPM
Retina
nTPM: 352.2
Samples: 4

Max nTPM: 366.5
Min nTPM: 334.9
Sample A Male 366.5
Sample B Male 356.0
Sample C Female 334.9
Sample D Female 351.3

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