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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:168.7 nTPM
HPA Brain:110.4 nTPM
GTEx:168.7 nTPM
FANTOM5:102.1 Scaled Tags Per Million
Pig:51.6 nTPM
Mouse:147.8 nTPM
Allen mouse:2.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.4
Sample id Sample description nTPM
Amygdala
nTPM: 110.4
2514 Male, age 75, right hemisphere 127.0
2814 Male, age 76, right hemisphere 124.5
1987 Female, age 91, left hemisphere 111.6
2695 Female, age 67, right hemisphere 111.3
2517 Female, age 94, left hemisphere 77.6
Basal amygdala
nTPM: 81.5
2609 Male, age 75, right hemisphere 105.1
2110 Male, age 80, left hemisphere 100.8
1955 Male, age 76, both hemispheres 85.7
2243 Female, age 91, right hemisphere 78.0
2685 Female, age 94, left hemisphere 66.2
2827 Female, age 67, right hemisphere 53.3
Central amygdala
nTPM: 89.2
1905 Male, age 76, both hemispheres 105.3
2515 Male, age 75, right hemisphere 98.3
2239 Male, age 80, left hemisphere 85.5
2701 Female, age 91, right hemisphere 83.7
2826 Female, age 94, left hemisphere 73.1
Corticomedial amygdala
nTPM: 82.9
2428 Male, age 75, right hemisphere 102.5
2829 Male, age 80, left hemisphere 91.1
2242 Female, age 91, right hemisphere 86.3
2429 Female, age 94, left hemisphere 81.0
2240 Male, age 76, both hemispheres 80.6
2535 Female, age 67, right hemisphere 55.6
Lateral amygdala
nTPM: 82.8
1883 Male, age 76, both hemispheres 109.2
2516 Male, age 75, right hemisphere 103.1
2256 Male, age 80, left hemisphere 82.8
2830 Female, age 67, right hemisphere 67.8
2255 Female, age 91, right hemisphere 67.5
2534 Female, age 94, left hemisphere 66.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 168.7
Samples: 152

Max nTPM: 408.8
Min nTPM: 89.3
Std nTPM: 50.1
Median nTPM: 155.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 408.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 371.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 354.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 328.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 289.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 266.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 262.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 258.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 255.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 246.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 241.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 239.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 233.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 232.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 230.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 228.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 227.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 227.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 218.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 217.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 214.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 212.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 205.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 202.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 199.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 199.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 198.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 197.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 195.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 195.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 194.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 192.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 190.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 189.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 188.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 187.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 187.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 186.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 186.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 186.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 186.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 185.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 185.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 184.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 184.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 181.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 180.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 177.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 176.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 176.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 175.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 175.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 173.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 172.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 170.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 170.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 169.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 169.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 167.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 167.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 166.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 165.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 164.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 162.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 162.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 162.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 162.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 160.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 159.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 158.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 157.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 156.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 156.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 155.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 155.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 155.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 154.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 151.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 151.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 151.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 151.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 150.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 149.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 148.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 148.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 148.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 147.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 146.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 146.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 146.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 144.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 144.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 144.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 143.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 143.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 143.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 143.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 142.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 142.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 142.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 142.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 142.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 141.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 141.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 137.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 137.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 137.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 136.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 135.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 132.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 132.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 131.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 130.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 127.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 127.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 127.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 127.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 126.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 126.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 125.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 124.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 123.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 121.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 118.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 118.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 116.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 113.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 105.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 104.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 100.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 100.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 98.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 98.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 98.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 89.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.1
FF:10151-102I7 76 years, female 102.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.6
Pig sample Sample description nTPM
Amygdala
nTPM: 51.6
Samples: 4

Max nTPM: 56.8
Min nTPM: 45.3
Sample A Female 56.8
Sample B Female 50.6
Sample C Male 53.5
Sample D Male 45.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 147.8
Samples: 4

Max nTPM: 160.4
Min nTPM: 143.0
Sample A Male 143.7
Sample B Male 143.0
Sample C Female 160.4
Sample D Female 144.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
69838004 Antisense, RP_050224_01_E09, Mouse strain C57BL/6J (56 days, male) 4.0
74819345 Antisense, RP_060315_02_E12, Mouse strain C57BL/6J (56 days, male) 1.0

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