We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ABHD17A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ABHD17A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:155.3 nTPM
HPA Brain:147.6 nTPM
GTEx:155.3 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:52.9 nTPM
Mouse:134.4 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.6
Sample id Sample description nTPM
Amygdala
nTPM: 121.2
2814 Male, age 76, right hemisphere 155.6
2695 Female, age 67, right hemisphere 124.4
2517 Female, age 94, left hemisphere 119.6
2514 Male, age 75, right hemisphere 104.3
1987 Female, age 91, left hemisphere 102.1
Basal amygdala
nTPM: 128.1
2827 Female, age 67, right hemisphere 169.8
2685 Female, age 94, left hemisphere 132.2
2609 Male, age 75, right hemisphere 122.4
2110 Male, age 80, left hemisphere 118.3
2243 Female, age 91, right hemisphere 116.3
1955 Male, age 76, both hemispheres 109.5
Central amygdala
nTPM: 136.0
2826 Female, age 94, left hemisphere 198.4
1905 Male, age 76, both hemispheres 135.6
2515 Male, age 75, right hemisphere 130.5
2239 Male, age 80, left hemisphere 123.0
2701 Female, age 91, right hemisphere 92.2
Corticomedial amygdala
nTPM: 110.9
2535 Female, age 67, right hemisphere 143.1
2829 Male, age 80, left hemisphere 121.7
2428 Male, age 75, right hemisphere 115.9
2242 Female, age 91, right hemisphere 107.1
2429 Female, age 94, left hemisphere 102.9
2240 Male, age 76, both hemispheres 74.6
Lateral amygdala
nTPM: 147.6
2830 Female, age 67, right hemisphere 189.1
2534 Female, age 94, left hemisphere 164.4
2256 Male, age 80, left hemisphere 150.0
1883 Male, age 76, both hemispheres 130.0
2255 Female, age 91, right hemisphere 129.0
2516 Male, age 75, right hemisphere 123.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 155.3
Samples: 152

Max nTPM: 317.8
Min nTPM: 46.5
Std nTPM: 55.5
Median nTPM: 148.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 317.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 303.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 278.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 276.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 275.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 267.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 261.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 256.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 255.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 243.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 242.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 240.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 238.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 232.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 229.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 226.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 226.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 224.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 224.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 223.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 221.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 217.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 215.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 212.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 208.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 207.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 207.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 206.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 203.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 201.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 199.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 199.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 194.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 194.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 194.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 193.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 190.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 190.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 189.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 188.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 185.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 182.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 182.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 180.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 179.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 179.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 177.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 175.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 174.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 174.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 173.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 173.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 172.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 172.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 172.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 171.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 169.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 168.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 166.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 166.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 166.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 164.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 162.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 162.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 161.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 159.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 159.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 158.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 157.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 156.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 149.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 148.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 148.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 147.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 146.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 146.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 144.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 139.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 138.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 138.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 136.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 136.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 135.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 135.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 132.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 132.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 131.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 131.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 130.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 130.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 130.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 127.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 126.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 125.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 124.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 124.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 124.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 122.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 120.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 120.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 118.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 117.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 113.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 111.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 111.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 108.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 107.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 107.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 105.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 103.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 103.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 100.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 98.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 97.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 97.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 93.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 91.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 91.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 88.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 84.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 79.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 78.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 69.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 68.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 62.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 58.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 54.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 52.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 51.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 46.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 20.1
FF:10151-102I7 76 years, female 20.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.9
Pig sample Sample description nTPM
Amygdala
nTPM: 53.0
Samples: 4

Max nTPM: 60.0
Min nTPM: 43.5
Sample A Female 60.0
Sample B Female 49.8
Sample C Male 58.5
Sample D Male 43.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 134.4
Samples: 4

Max nTPM: 176.9
Min nTPM: 112.6
Sample A Male 112.6
Sample B Male 122.8
Sample C Female 176.9
Sample D Female 125.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69549674 Antisense, RP_050317_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org