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  • ABHD17A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:158.6 nTPM
HPA Brain:140.2 nTPM
GTEx:158.6 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:89.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 106.7
2565 Male, age 75, midline 122.1
2816 Male, age 47, midline 114.8
2194 Female, age 79, both hemispheres 111.4
1981 Female, age 72, midline 108.6
2048 Male, age 55, midline 76.7
Cervical spinal cord, dorsal horn
nTPM: 102.1
2296 Male, age 66, both hemispheres 129.7
2173 Female, age 72, unknown 128.8
1877 Male, age 55, unknown 103.8
2297 Male, age 75, both hemispheres 85.7
2069 Male, age 47, both hemispheres 84.8
2721 Male, age 90, both hemispheres 79.7
Cervical spinal cord, ventral horn
nTPM: 140.2
2480 Male, age 75, both hemispheres 170.0
2068 Male, age 55, unknown 151.7
2809 Male, age 90, both hemispheres 146.9
2820 Female, age 79, both hemispheres 140.9
2295 Male, age 66, both hemispheres 139.6
2098 Female, age 72, unknown 91.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 158.6
Samples: 159

Max nTPM: 366.4
Min nTPM: 58.5
Std nTPM: 56.9
Median nTPM: 152.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 366.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 320.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 308.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 306.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 279.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 273.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 273.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 273.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 271.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 260.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 256.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 250.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 244.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 236.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 235.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 234.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 231.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 229.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 227.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 226.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 226.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 225.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 225.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 220.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 218.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 217.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 215.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 213.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 209.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 202.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 202.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 200.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 199.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 199.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 197.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 196.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 196.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 193.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 192.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 190.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 187.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 185.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 185.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 184.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 183.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 182.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 181.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 180.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 178.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 178.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 177.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 177.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 176.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 176.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 176.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 174.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 173.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 173.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 170.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 168.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 167.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 166.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 166.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 163.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 162.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 162.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 160.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 159.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 157.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 156.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 155.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 155.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 154.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 154.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 154.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 153.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 152.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 151.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 150.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 149.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 149.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 146.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 146.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 145.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 144.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 142.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 140.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 140.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 139.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 137.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 137.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 137.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 136.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 135.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 135.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 134.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 133.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 133.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 132.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 132.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 131.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 128.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 127.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 126.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 125.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 122.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 120.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 119.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 119.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 119.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 119.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 118.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 117.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 114.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 114.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 113.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 113.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 111.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 111.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 110.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 109.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 107.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 105.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 104.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 101.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 101.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 100.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 99.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 96.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 95.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 94.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 94.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 92.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 89.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 88.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 82.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 78.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 77.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 74.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 74.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 64.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 59.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 58.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 9.5
FF:10181-103D1 60 years, female 13.3
FF:10159-103A6 76 years, female 5.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 73.7
Samples: 4

Max nTPM: 79.2
Min nTPM: 67.3
Sample A Female 67.3
Sample B Female 69.7
Sample C Male 78.6
Sample D Male 79.2
Ventral spinal cord
nTPM: 89.6
Samples: 4

Max nTPM: 101.8
Min nTPM: 75.8
Sample A Female 75.8
Sample B Female 94.8
Sample C Male 85.8
Sample D Male 101.8

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