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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:252.7 nTPM
HPA Brain:69.2 nTPM
GTEx:252.7 nTPM
FANTOM5:1112.9 Scaled Tags Per Million
Pig:293.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 59.2
2048 Male, age 55, midline 74.6
1981 Female, age 72, midline 67.9
2194 Female, age 79, both hemispheres 57.0
2816 Male, age 47, midline 51.0
2565 Male, age 75, midline 45.3
Cervical spinal cord, dorsal horn
nTPM: 63.9
2069 Male, age 47, both hemispheres 74.1
2173 Female, age 72, unknown 68.7
1877 Male, age 55, unknown 64.3
2721 Male, age 90, both hemispheres 63.4
2297 Male, age 75, both hemispheres 60.5
2296 Male, age 66, both hemispheres 52.4
Cervical spinal cord, ventral horn
nTPM: 69.2
2098 Female, age 72, unknown 108.9
2809 Male, age 90, both hemispheres 95.6
2295 Male, age 66, both hemispheres 64.5
2480 Male, age 75, both hemispheres 51.6
2068 Male, age 55, unknown 48.9
2820 Female, age 79, both hemispheres 45.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 252.7
Samples: 159

Max nTPM: 924.2
Min nTPM: 71.5
Std nTPM: 146.2
Median nTPM: 203.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 924.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 851.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 823.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 639.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 611.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 601.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 582.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 517.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 500.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 496.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 494.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 471.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 464.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 462.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 454.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 445.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 434.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 430.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 422.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 406.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 403.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 403.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 401.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 387.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 374.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 373.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 358.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 354.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 349.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 346.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 343.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 339.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 335.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 333.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 331.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 329.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 329.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 328.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 327.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 315.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 313.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 311.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 310.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 308.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 304.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 302.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 294.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 294.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 288.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 288.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 287.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 282.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 276.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 275.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 273.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 266.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 265.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 263.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 263.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 257.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 253.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 250.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 247.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 243.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 239.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 237.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 234.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 233.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 232.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 229.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 226.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 219.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 219.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 217.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 215.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 211.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 211.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 207.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 205.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 203.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 202.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 200.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 199.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 198.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 197.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 194.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 192.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 188.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 188.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 184.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 184.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 183.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 183.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 182.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 182.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 181.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 180.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 178.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 175.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 175.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 174.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 173.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 172.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 172.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 172.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 171.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 167.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 164.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 163.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 162.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 157.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 155.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 154.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 153.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 153.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 151.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 150.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 146.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 145.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 145.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 144.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 144.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 143.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 142.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 142.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 141.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 141.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 140.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 139.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 137.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 136.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 136.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 136.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 135.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 134.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 132.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 127.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 126.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 122.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 120.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 116.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 115.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 114.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 113.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 111.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 108.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 106.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 106.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 105.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 105.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 105.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 104.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 88.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 71.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1112.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1112.9
FF:10181-103D1 60 years, female 1582.4
FF:10159-103A6 76 years, female 643.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 293.5
Samples: 4

Max nTPM: 450.7
Min nTPM: 139.6
Sample A Female 139.6
Sample B Female 354.2
Sample C Male 450.7
Sample D Male 229.5
Ventral spinal cord
nTPM: 203.9
Samples: 4

Max nTPM: 253.7
Min nTPM: 141.7
Sample A Female 141.7
Sample B Female 189.4
Sample C Male 253.7
Sample D Male 230.8

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