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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:2486.5 nTPM
FANTOM5:2055.3 Scaled Tags Per Million
Pig:1038.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA065539Antibody HPA068768Antibody CAB008363Antibody CAB069921
Glial cells Not detectedNot detectedHighHigh
Neuronal cells MediumMediumHighHigh








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2486.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2486.5
Samples: 246

Max nTPM: 8173.4
Min nTPM: 125.5
Std nTPM: 1191.3
Median nTPM: 2309.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 8173.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 7675.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 6858.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 5997.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 5618.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 5341.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5241.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 4999.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 4811.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 4705.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 4652.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 4573.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4558.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4549.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 4547.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 4447.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 4326.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 4314.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 4229.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 4204.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4181.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 4012.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 3958.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 3949.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 3891.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 3884.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3772.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 3766.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 3764.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 3749.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 3729.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 3718.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 3645.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 3628.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 3570.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3568.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 3560.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 3555.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3545.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 3532.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3520.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 3520.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3513.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 3500.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 3481.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 3474.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 3472.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 3448.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 3429.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 3373.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 3369.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 3358.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 3346.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 3317.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 3277.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 3258.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 3255.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 3239.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 3213.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3193.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 3183.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 3169.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 3102.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3099.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 3057.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3046.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 3022.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 3018.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2992.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2976.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2957.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2938.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2934.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2847.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 2826.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2803.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2801.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2792.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2783.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2777.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2771.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2749.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2739.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2736.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2713.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2704.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2694.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2686.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2686.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2672.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2671.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 2652.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2639.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2632.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 2626.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2614.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2589.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2576.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2573.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2560.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2558.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2544.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2490.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2483.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2481.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2462.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2456.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2447.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 2441.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2434.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2428.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2424.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2423.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2409.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2396.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2384.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2345.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2344.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2336.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2332.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2328.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2315.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2313.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2305.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 2297.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2287.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2274.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2272.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2267.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2240.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2227.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2219.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2217.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2178.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2171.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2168.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2163.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2151.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2133.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2105.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2100.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2087.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2081.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2073.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2066.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2050.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2037.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2036.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2034.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2008.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2005.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1985.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1981.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1967.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1955.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1955.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1909.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1905.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1897.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1896.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1882.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1879.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1876.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1868.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1863.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1849.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1848.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1838.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1828.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1810.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1799.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1799.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1790.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1777.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1755.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1742.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1730.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1729.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1727.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1724.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1714.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1711.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1707.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1703.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1698.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1694.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1664.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1650.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1648.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1641.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1638.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1628.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1628.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1626.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1617.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1583.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1568.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1550.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1533.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1519.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1518.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1507.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1501.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1456.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1454.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1426.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1418.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1415.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1402.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1383.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1372.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1363.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1349.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1332.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1332.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1330.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1302.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1301.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1295.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1275.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1261.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1224.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1210.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1205.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1193.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1180.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1151.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1135.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1060.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1040.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1039.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1005.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 961.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 927.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 905.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 898.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 847.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 831.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 721.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 714.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 660.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 582.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 442.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 419.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 234.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 125.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2055.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2055.3
FF:10164-103B2 76 years, female 2055.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1038.9
Pig sample Sample description nTPM
Caudate
nTPM: 1038.9
Samples: 4

Max nTPM: 1307.6
Min nTPM: 814.6
Sample A Female 884.1
Sample B Female 1307.6
Sample C Male 1149.2
Sample D Male 814.6

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