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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:161.3 nTPM
HPA:54.9 nTPM
GTEx:161.3 nTPM
FANTOM5:102.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA065539Antibody HPA068768Antibody CAB008363Antibody CAB069921
Endocrine cells Not detected---
Enterocytes Not detected---
Enterocytes - Microvilli Not detected---
Glandular cells -Not detectedNot detectedNot detected
Goblet cells Not detected---
Paneth cells Not detected---









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.9
overview
Male, age 65
Small intestine sample 232
nTPM: 58
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 45.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 93
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 23.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 161.3
Samples: 187

Max nTPM: 650.1
Min nTPM: 12.9
Std nTPM: 95.1
Median nTPM: 142.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 650.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 417.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 414.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 391.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 380.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 372.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 364.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 361.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 360.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 358.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 349.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 337.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 323.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 320.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 320.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 309.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 307.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 303.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 299.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 292.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 283.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 272.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 272.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 270.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 261.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 259.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 257.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 256.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 255.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 248.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 242.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 241.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 241.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 238.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 236.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 230.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 230.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 229.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 229.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 228.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 228.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 227.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 226.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 222.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 215.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 213.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 212.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 211.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 208.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 206.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 204.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 203.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 200.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 200.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 198.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 193.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 192.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 191.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 188.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 180.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 179.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 176.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 175.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 173.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 172.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 172.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 172.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 172.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 170.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 168.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 166.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 165.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 161.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 161.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 161.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 161.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 160.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 160.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 157.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 156.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 155.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 154.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 152.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 150.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 149.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 148.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 148.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 147.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 147.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 145.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 144.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 144.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 143.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 142.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 142.5
GTEX-1192X-2526-SM-59868 50-59 years, male 142.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 139.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 138.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 138.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 135.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 133.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 133.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 133.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 133.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 131.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 126.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 126.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 126.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 126.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 124.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 123.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 123.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 122.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 122.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 121.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 120.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 117.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 115.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 114.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 114.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 113.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 113.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 112.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 111.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 109.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 108.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 105.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 104.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 102.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 101.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 100.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 99.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 99.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 97.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 97.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 96.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 96.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 95.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 95.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 95.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 94.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 92.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 91.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 90.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 90.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 89.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 88.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 86.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 86.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 82.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 81.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 80.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 80.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 78.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 78.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 77.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 76.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 75.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 75.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 75.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 71.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 70.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 70.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 65.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 65.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 63.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 61.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 60.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 60.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 57.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 56.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 55.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 55.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 52.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 50.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 47.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 45.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 44.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 43.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 42.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 42.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 30.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 30.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 28.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 27.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 26.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 12.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 102.2
FF:10024-101D6 15,40,85 years, mixed 102.2

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