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TISSUE PRIMARY DATA HYPOTHALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hypothalamus
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:332.8 nTPM
HPA Brain:132.0 nTPM
GTEx:332.8 nTPM
Mouse:53.4 nTPM
Allen mouse:1.8 Expression energy

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.0
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 115.3
1961 Female, age 42, unknown 152.5
2226 Male, age 75, left hemisphere 78.0
Dorsomedial nucleus
nTPM: 118.1
2041 Female, age 72, unknown 173.8
1989 Male, age 62, unknown 99.3
2017 Female, age 42, unknown 81.1
Lateral hypothalamic area
nTPM: 122.6
2271 Male, age 75, both hemispheres 151.7
1791 Male, age 80, right hemisphere 140.6
2412 Male, age 62, unknown 135.3
2228 Male, age 66, unknown 62.7
Mammillary body
nTPM: 91.7
1948 Female, age 72, unknown 101.7
1834 Female, age 42, unknown 98.1
1945 Male, age 80, right hemisphere 97.1
2413 Male, age 66, unknown 94.7
1923 Female, age 72, unknown 67.0
Paraventricular nucleus
nTPM: 106.9
2700 Male, age 62, unknown 106.9
Preoptic area
nTPM: 124.7
1861 Female, age 42, unknown 179.9
1907 Male, age 80, right hemisphere 101.5
2414 Female, age 72, unknown 92.8
Supraoptic nucleus
nTPM: 112.0
1894 Female, age 72, unknown 129.4
2835 Female, age 72, unknown 120.8
2043 Male, age 62, unknown 85.8
Ventromedial nucleus
nTPM: 132.0
1982 Female, age 72, unknown 145.4
1822 Female, age 42, unknown 118.6

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.8
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 332.8
Samples: 202

Max nTPM: 2281.0
Min nTPM: 38.5
Std nTPM: 250.0
Median nTPM: 280.7
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 2281.0
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 1353.8
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 1202.3
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 1164.6
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 1059.6
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 987.3
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 925.2
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 923.9
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 799.8
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 735.2
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 732.1
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 679.0
GTEX-RU72-0011-R8A-SM-2TF61 50-59 years, female 634.2
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 621.0
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 618.7
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 616.1
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 592.3
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 591.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 586.2
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 580.7
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 579.3
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 559.0
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 555.5
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 555.0
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 529.8
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 510.3
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 508.7
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 502.0
GTEX-TSE9-0011-R8A-SM-3DB7R 60-69 years, female 492.6
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 489.9
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 483.1
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 483.0
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 478.5
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 472.3
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 456.0
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 453.1
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 444.9
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 444.3
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 441.2
GTEX-145MI-0011-R8b-SM-5PNZ9 60-69 years, female 437.7
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 437.4
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 433.5
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 431.9
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 429.4
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 428.1
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 424.7
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 423.9
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 417.9
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 417.7
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 408.5
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 405.1
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 401.7
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 400.9
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 400.0
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 398.2
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 396.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 394.5
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 378.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 377.7
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 377.2
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 374.4
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 364.8
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 361.1
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 360.9
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 359.5
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 357.7
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 354.4
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 352.6
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 349.8
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 346.4
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 340.7
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 336.6
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 336.3
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 333.7
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 333.5
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 332.6
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 329.8
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 325.8
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 323.9
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 323.4
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 323.3
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 322.6
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 317.9
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 315.0
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 314.9
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 313.3
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 310.8
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 303.0
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 302.0
GTEX-R55E-0011-R8A-SM-2TC66 20-29 years, male 301.9
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 300.8
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 300.2
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 299.5
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 299.0
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 298.4
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 295.1
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 293.5
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 289.9
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 289.0
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 288.8
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 281.6
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 279.7
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 275.2
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 273.6
GTEX-Q2AG-0011-R8A-SM-2HMK5 40-49 years, female 270.9
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 270.8
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 267.5
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 263.8
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 262.7
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 261.2
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 259.5
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 259.4
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 258.6
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 255.5
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 251.9
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 249.4
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 245.3
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 245.0
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 245.0
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 243.9
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 243.7
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 238.8
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 237.4
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 233.9
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 232.5
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 232.4
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 231.0
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 230.0
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 227.1
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 226.7
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 226.1
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 225.6
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 224.2
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 223.7
GTEX-NL3H-0011-R8a-SM-DIPDY 60-69 years, male 220.5
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 217.6
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 216.3
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 213.8
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 211.6
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 203.4
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 203.2
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 199.5
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 199.2
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 198.3
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 194.2
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 193.1
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 190.5
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 190.1
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 189.5
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 189.2
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 187.5
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 185.2
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 182.7
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 182.5
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 179.9
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 176.8
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 176.6
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 171.8
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 166.5
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 165.5
GTEX-S7SE-0011-R8A-SM-2XCDG 50-59 years, male 164.7
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 164.1
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 164.1
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 163.4
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 163.3
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 161.2
GTEX-13NZ8-0011-R8b-SM-5KM48 60-69 years, female 161.1
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 159.1
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 158.3
GTEX-N7MT-0011-R8a-SM-2I5GU 60-69 years, female 158.0
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 152.4
GTEX-183WM-0011-R8a-SM-7189W 70-79 years, female 148.8
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 148.1
GTEX-18464-0011-R8a-SM-72D4Z 50-59 years, male 148.0
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 147.7
GTEX-QDT8-0011-R8A-SM-32PKE 30-39 years, female 146.9
GTEX-13IVO-0011-R8a-SM-5L3DY 70-79 years, male 138.9
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 127.6
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 124.2
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 124.1
GTEX-OHPN-0011-R8A-SM-33HBT 60-69 years, female 122.1
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 120.6
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 112.9
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 112.1
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 112.1
GTEX-NPJ7-0011-R8a-SM-2I3G2 60-69 years, female 108.2
GTEX-1H3VE-0011-R8b-SM-A9G1L 40-49 years, male 107.6
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 104.4
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 103.6
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 101.8
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 99.0
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 92.4
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 91.9
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 90.7
GTEX-X4EP-0011-R8B-SM-4QASL 60-69 years, female 90.7
GTEX-14LLW-0011-R8a-SM-62LFG 70-79 years, female 81.5
GTEX-XLM4-0011-R8A-SM-4AT44 60-69 years, male 81.1
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 80.4
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 54.6
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 53.9
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 53.1
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 38.5
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HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 53.4
Samples: 4

Max nTPM: 66.1
Min nTPM: 44.9
Sample A Male 44.9
Sample B Male 57.1
Sample C Female 66.1
Sample D Female 45.6

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.8
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 1.8
68910959 Antisense, RP_041214_01_G03, Mouse strain C57BL/6J (56 days, male) 1.8

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