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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1166.7 nTPM
GTEx:1166.7 nTPM
FANTOM5:506.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047153
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1166.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1166.7
Samples: 156

Max nTPM: 3939.6
Min nTPM: 531.5
Std nTPM: 418.2
Median nTPM: 1100.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3939.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2475.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2413.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2228.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2149.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2023.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1974.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1916.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1840.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1839.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1688.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1666.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1664.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1622.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1603.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1586.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1569.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1552.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1513.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1512.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1511.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1498.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1498.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1495.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1485.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1478.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1478.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1477.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1474.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1443.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1424.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1412.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1391.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1387.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1381.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1367.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1357.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1342.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1334.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1333.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1312.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1309.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1296.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1290.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1277.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1276.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1253.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1245.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1241.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1232.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1228.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1227.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1226.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1223.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1223.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1223.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1222.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1204.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1202.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1199.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1197.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1190.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1186.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1170.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1162.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1154.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1147.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1147.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1143.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1142.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1142.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1141.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 1126.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1116.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1109.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1107.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1104.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1101.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1098.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1092.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1090.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1089.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1081.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1074.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1074.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1071.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1068.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1066.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1066.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1065.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1058.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1055.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1045.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1045.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1039.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1031.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1017.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1016.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1014.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1013.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1008.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1000.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 990.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 986.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 984.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 979.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 957.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 942.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 933.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 930.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 928.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 924.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 923.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 921.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 915.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 909.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 890.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 889.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 887.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 887.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 887.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 884.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 880.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 872.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 866.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 852.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 852.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 850.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 845.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 844.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 811.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 807.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 806.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 803.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 793.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 790.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 788.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 777.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 771.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 768.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 768.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 717.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 713.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 697.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 690.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 678.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 672.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 672.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 671.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 660.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 642.4
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 636.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 622.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 581.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 565.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 531.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

506.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 506.7
FF:10204-103F6 68 years, female 506.7

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