We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
JUND
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • JUND
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:174.2 nTPM
HPA Brain:288.3 nTPM
GTEx:174.2 nTPM
FANTOM5:211.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 281.5
2194 Female, age 79, both hemispheres 331.5
2565 Male, age 75, midline 313.8
1981 Female, age 72, midline 292.3
2816 Male, age 47, midline 275.2
2048 Male, age 55, midline 194.8
Cervical spinal cord, dorsal horn
nTPM: 260.5
2297 Male, age 75, both hemispheres 283.4
2069 Male, age 47, both hemispheres 281.0
2296 Male, age 66, both hemispheres 276.5
2173 Female, age 72, unknown 253.6
2721 Male, age 90, both hemispheres 234.5
1877 Male, age 55, unknown 234.2
Cervical spinal cord, ventral horn
nTPM: 288.3
2068 Male, age 55, unknown 376.5
2295 Male, age 66, both hemispheres 316.7
2480 Male, age 75, both hemispheres 279.4
2820 Female, age 79, both hemispheres 269.4
2809 Male, age 90, both hemispheres 255.6
2098 Female, age 72, unknown 232.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 174.2
Samples: 159

Max nTPM: 464.7
Min nTPM: 69.5
Std nTPM: 64.2
Median nTPM: 162.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 464.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 397.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 353.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 336.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 332.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 326.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 318.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 315.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 303.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 301.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 288.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 287.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 277.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 274.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 272.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 270.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 247.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 245.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 240.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 235.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 233.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 232.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 232.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 230.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 228.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 228.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 227.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 226.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 221.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 220.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 219.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 211.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 211.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 209.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 207.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 205.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 204.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 204.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 204.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 202.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 201.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 198.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 198.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 197.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 195.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 193.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 192.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 191.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 189.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 185.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 185.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 183.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 183.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 182.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 182.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 182.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 180.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 179.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 179.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 177.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 176.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 173.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 173.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 171.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 171.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 171.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 170.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 170.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 168.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 168.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 168.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 166.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 165.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 165.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 164.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 163.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 162.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 162.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 162.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 161.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 161.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 161.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 161.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 159.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 159.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 158.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 156.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 156.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 154.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 153.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 151.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 150.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 150.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 150.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 149.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 149.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 149.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 148.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 148.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 146.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 144.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 143.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 142.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 142.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 141.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 141.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 140.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 140.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 139.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 138.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 137.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 137.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 135.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 135.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 134.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 134.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 133.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 132.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 131.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 131.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 131.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 130.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 128.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 126.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 125.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 122.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 122.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 120.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 120.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 119.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 117.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 117.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 115.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 113.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 108.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 107.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 107.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 100.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 99.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 98.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 98.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 97.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 96.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 95.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 95.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 93.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 91.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 84.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 80.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 73.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 72.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 69.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 211.9
FF:10181-103D1 60 years, female 260.7
FF:10159-103A6 76 years, female 163.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org