MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:64.7 nTPM
GTEx:30.4 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:74.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2411 Female, age 72, unknown 44.1
1870 Female, age 42, unknown 41.5
2219 Male, age 76, both hemispheres 35.5
1833 Male, age 53, unknown 35.3
1827 Male, age 72, unknown 31.5
1830 Male, age 51, unknown 27.7
2666 Male, age 74, left hemisphere 26.7
2828 Female, age 72, unknown 26.3
2586 Male, age 75, left hemisphere 26.0
2019 Male, age 18, unknown 5.0
Dorsal raphe nucleus
nTPM: 47.7
2298 Female, age 72, unknown 60.6
2750 Male, age 76, both hemispheres 55.3
2047 Male, age 72, unknown 51.7
1828 Male, age 53, unknown 41.3
2016 Female, age 72, unknown 29.9
Inferior colliculus
nTPM: 35.0
2849 Male, age 72, unknown 37.6
2097 Female, age 72, unknown 35.6
1890 Male, age 53, unknown 33.8
1848 Female, age 42, unknown 33.1
Median raphe nucleus
nTPM: 64.7
2220 Male, age 76, midline 64.7
Periaquaductal grey, anterior
nTPM: 48.4
1947 Male, age 18, unknown 65.1
1795 Male, age 51, unknown 46.9
2502 Female, age 75, unknown 33.3
Periaquaductal grey, dorsal
nTPM: 40.4
1840 Male, age 53, unknown 51.6
2850 Male, age 76, both hemispheres 46.6
1831 Male, age 72, unknown 33.2
2464 Female, age 72, unknown 30.3
Periaquaductal grey, lateral
nTPM: 49.1
2053 Male, age 18, unknown 72.8
2140 Male, age 76, both hemispheres 40.0
2272 Male, age 74, both hemispheres 34.4
Pretectal area
nTPM: 31.6
2825 Male, age 18, unknown 79.7
2224 Female, age 72, unknown 46.1
2316 Male, age 76, right hemisphere 37.4
2273 Male, age 74, both hemispheres 37.0
2667 Female, age 75, unknown 35.0
2407 Male, age 75, both hemispheres 27.3
1816 Male, age 51, unknown 21.9
1815 Male, age 53, unknown 17.2
2007 Male, age 72, unknown 17.1
1944 Female, age 72, unknown 16.7
1817 Female, age 42, unknown 11.8
Red nucleus
nTPM: 24.6
1821 Female, age 72, unknown 34.3
1954 Female, age 42, unknown 32.5
2227 Male, age 72, unknown 30.6
2769 Male, age 72, unknown 29.2
2584 Male, age 75, left hemisphere 28.6
2725 Female, age 75, unknown 27.8
1904 Male, age 53, unknown 25.6
2823 Male, age 76, right hemisphere 23.1
2503 Female, age 72, unknown 20.9
1865 Male, age 51, unknown 18.2
2588 Male, age 74, left hemisphere 18.1
2785 Male, age 18, unknown 6.1
Substantia nigra
nTPM: 30.6
2699 Male, age 18, unknown 46.5
2241 Male, age 72, unknown 37.0
2665 Male, age 74, both hemispheres 35.8
1851 Male, age 51, unknown 33.3
1916 Female, age 42, unknown 31.4
2590 Female, age 75, unknown 30.8
1889 Female, age 72, unknown 25.9
2409 Female, age 72, unknown 23.2
1941 Male, age 53, unknown 21.5
2583 Male, age 75, right hemisphere 21.0
Superior colliculus
nTPM: 28.3
2261 Male, age 18, unknown 44.8
2587 Male, age 74, left hemisphere 33.6
1796 Male, age 53, unknown 33.3
1839 Male, age 51, unknown 31.9
1895 Male, age 76, right hemisphere 31.4
2664 Male, age 75, both hemispheres 29.8
2668 Female, age 75, unknown 23.8
2087 Female, age 72, unknown 21.0
1995 Male, age 72, unknown 17.3
1913 Female, age 42, unknown 16.2
Ventral tegmental area
nTPM: 37.6
1942 Male, age 51, unknown 42.9
2218 Male, age 76, both hemispheres 42.2
2021 Male, age 53, unknown 40.4
1915 Female, age 42, unknown 39.8
2223 Female, age 72, unknown 31.3
2410 Female, age 72, unknown 29.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 78.1
Min nTPM: 10.8
Std nTPM: 11.2
Median nTPM: 29.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 78.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 68.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 63.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 54.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 53.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 52.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 51.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 46.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.3
FF:10158-103A5 76 years, female 13.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 30.0
Min nTPM: 4.9
Sample A Female 28.8
Sample B Female 16.2
Sample C Male 30.0
Sample D Male 4.9
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 15.0
Sample C Male 5.6
Sample D Male 10.0
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 20.5
Min nTPM: 9.8
Sample B Female 11.2
Sample C Male 20.5
Sample D Male 9.8
Superior colliculi
nTPM: 7.9
Samples: 4

Max nTPM: 10.4
Min nTPM: 4.5
Sample A Female 10.3
Sample B Female 10.4
Sample C Male 4.5
Sample D Male 6.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.5
Samples: 4

Max nTPM: 82.2
Min nTPM: 63.5
Sample A Male 82.2
Sample B Male 79.8
Sample C Female 63.5
Sample D Female 72.3

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