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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:189.4 nTPM
HPA:189.4 nTPM
GTEx:144.3 nTPM
FANTOM5:179.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA020896Antibody HPA020934
Glandular cells HighLow





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.4
overview
Male, age 65
Small intestine sample 232
nTPM: 152.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 318.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 117.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 168.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 144.3
Samples: 187

Max nTPM: 1013.0
Min nTPM: 10.1
Std nTPM: 137.0
Median nTPM: 92.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1013.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 541.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 526.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 490.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 441.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 440.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 420.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 416.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 409.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 398.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 392.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 388.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 385.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 376.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 349.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 337.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 330.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 330.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 330.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 324.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 320.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 320.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 317.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 306.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 301.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 296.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 291.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 282.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 282.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 278.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 275.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 274.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 264.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 258.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 258.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 253.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 251.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 248.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 244.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 243.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 240.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 239.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 238.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 238.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 238.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 225.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 222.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 221.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 217.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 215.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 210.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 202.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 197.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 194.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 187.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 186.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 181.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 173.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 171.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 166.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 164.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 162.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 160.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 156.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 154.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 151.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 150.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 150.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 148.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 144.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 139.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 137.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 132.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 129.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 128.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 126.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 124.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 119.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 116.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 115.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 113.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 111.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 111.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 110.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 108.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 105.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 101.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 100.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 99.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 97.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 96.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 96.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 96.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 92.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 90.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 89.5
GTEX-1192X-2526-SM-59868 50-59 years, male 89.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 89.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 81.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 80.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 80.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 78.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 75.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 75.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 75.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 74.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 74.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 74.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 73.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 71.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 71.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 70.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 67.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 66.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 65.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 64.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 63.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 61.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 61.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 61.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 60.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 59.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 59.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 57.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 57.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 56.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 55.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 55.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 54.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 53.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 53.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 52.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 52.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 52.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 51.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 50.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 50.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 49.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 49.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 47.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 46.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 46.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 46.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 46.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 45.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 45.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 42.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 42.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 38.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 38.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 37.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 36.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 35.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 34.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 34.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 34.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 34.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 33.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 31.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 31.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 30.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 30.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 28.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 28.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 28.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 27.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 27.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 25.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 24.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 23.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 23.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 21.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 21.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 20.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 20.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 19.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 19.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 18.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 18.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 16.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 16.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 15.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 14.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 12.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 12.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 10.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 10.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 179.8
FF:10024-101D6 15,40,85 years, mixed 179.8

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