We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CHMP2A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CHMP2A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:156.8 nTPM
HPA Brain:68.4 nTPM
GTEx:156.8 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:51.9 nTPM
Mouse:179.4 nTPM
Allen mouse:11.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.4
Sample id Sample description nTPM
Amygdala
nTPM: 68.4
2695 Female, age 67, right hemisphere 72.9
2814 Male, age 76, right hemisphere 72.0
2514 Male, age 75, right hemisphere 71.2
1987 Female, age 91, left hemisphere 69.3
2517 Female, age 94, left hemisphere 56.8
Basal amygdala
nTPM: 60.4
2110 Male, age 80, left hemisphere 69.9
1955 Male, age 76, both hemispheres 67.5
2243 Female, age 91, right hemisphere 66.8
2609 Male, age 75, right hemisphere 56.3
2685 Female, age 94, left hemisphere 55.4
2827 Female, age 67, right hemisphere 46.3
Central amygdala
nTPM: 61.6
2826 Female, age 94, left hemisphere 67.5
1905 Male, age 76, both hemispheres 64.8
2239 Male, age 80, left hemisphere 62.6
2515 Male, age 75, right hemisphere 60.1
2701 Female, age 91, right hemisphere 53.0
Corticomedial amygdala
nTPM: 62.3
2829 Male, age 80, left hemisphere 69.2
2242 Female, age 91, right hemisphere 68.8
2240 Male, age 76, both hemispheres 66.0
2428 Male, age 75, right hemisphere 63.7
2429 Female, age 94, left hemisphere 61.8
2535 Female, age 67, right hemisphere 44.5
Lateral amygdala
nTPM: 58.0
2516 Male, age 75, right hemisphere 69.6
1883 Male, age 76, both hemispheres 68.2
2534 Female, age 94, left hemisphere 58.0
2256 Male, age 80, left hemisphere 54.1
2255 Female, age 91, right hemisphere 49.5
2830 Female, age 67, right hemisphere 48.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 156.8
Samples: 152

Max nTPM: 350.1
Min nTPM: 95.5
Std nTPM: 39.4
Median nTPM: 150.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 350.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 327.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 321.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 288.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 280.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 248.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 221.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 207.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 205.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 201.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 201.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 199.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 199.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 193.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 192.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 188.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 187.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 187.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 186.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 185.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 184.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 183.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 181.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 180.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 179.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 178.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 178.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 175.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 174.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 173.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 172.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 171.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 171.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 171.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 171.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 171.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 171.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 168.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 167.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 167.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 167.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 166.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 165.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 164.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 163.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 163.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 163.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 162.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 161.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 161.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 161.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 159.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 159.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 158.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 157.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 156.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 155.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 155.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 154.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 154.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 153.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 153.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 153.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 152.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 152.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 152.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 150.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 150.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 150.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 150.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 149.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 149.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 149.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 148.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 148.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 147.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 146.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 146.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 146.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 145.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 145.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 144.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 144.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 143.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 143.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 143.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 141.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 140.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 140.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 140.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 138.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 138.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 137.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 136.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 136.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 136.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 135.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 135.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 134.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 134.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 134.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 134.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 134.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 133.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 131.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 130.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 129.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 129.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 129.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 129.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 128.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 128.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 126.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 126.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 124.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 124.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 121.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 121.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 120.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 115.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 115.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 114.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 112.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 109.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 102.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 101.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.5
FF:10151-102I7 76 years, female 86.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.9
Pig sample Sample description nTPM
Amygdala
nTPM: 51.9
Samples: 4

Max nTPM: 67.6
Min nTPM: 43.1
Sample A Female 67.6
Sample B Female 47.2
Sample C Male 49.6
Sample D Male 43.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 179.4
Samples: 4

Max nTPM: 195.6
Min nTPM: 171.9
Sample A Male 176.5
Sample B Male 195.6
Sample C Female 173.4
Sample D Female 171.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.6
76097722 Antisense, RP_060626_01_D06, Mouse strain C57BL/6J (56 days, male) 11.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org