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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:157.9 nTPM
HPA Brain:78.5 nTPM
GTEx:157.9 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:81.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 77.4
1981 Female, age 72, midline 98.6
2565 Male, age 75, midline 72.6
2194 Female, age 79, both hemispheres 72.4
2048 Male, age 55, midline 71.8
2816 Male, age 47, midline 71.4
Cervical spinal cord, dorsal horn
nTPM: 74.8
2173 Female, age 72, unknown 91.9
2296 Male, age 66, both hemispheres 87.3
2069 Male, age 47, both hemispheres 80.8
1877 Male, age 55, unknown 68.3
2721 Male, age 90, both hemispheres 65.7
2297 Male, age 75, both hemispheres 54.8
Cervical spinal cord, ventral horn
nTPM: 78.5
2098 Female, age 72, unknown 101.6
2809 Male, age 90, both hemispheres 82.1
2295 Male, age 66, both hemispheres 78.6
2480 Male, age 75, both hemispheres 77.2
2068 Male, age 55, unknown 72.2
2820 Female, age 79, both hemispheres 59.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.9
Samples: 159

Max nTPM: 247.6
Min nTPM: 83.4
Std nTPM: 32.3
Median nTPM: 154.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 247.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 239.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 237.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 234.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 230.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 225.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 221.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 221.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 220.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 212.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 206.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 204.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 204.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 200.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 199.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 199.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 198.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 198.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 196.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 196.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 195.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 190.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 189.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 188.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 187.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 187.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 187.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 185.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 185.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 185.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 185.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 184.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 184.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 182.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 181.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 181.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 180.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 179.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 179.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 178.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 177.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 175.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 175.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 174.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 174.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 173.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 173.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 172.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 172.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 171.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 171.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 171.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 171.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 171.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 168.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 167.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 167.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 167.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 166.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 165.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 164.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 164.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 164.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 164.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 164.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 160.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 159.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 158.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 157.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 157.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 156.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 155.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 155.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 155.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 154.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 154.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 154.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 153.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 152.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 152.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 152.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 151.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 150.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 150.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 149.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 149.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 148.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 147.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 147.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 146.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 146.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 146.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 146.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 145.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 145.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 145.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 145.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 141.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 140.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 140.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 140.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 139.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 139.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 139.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 139.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 138.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 137.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 137.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 137.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 137.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 136.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 136.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 136.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 135.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 134.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 134.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 134.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 133.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 132.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 132.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 131.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 130.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 130.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 130.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 129.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 128.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 127.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 126.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 125.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 125.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 123.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 123.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 122.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 120.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 119.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 117.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 116.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 115.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 113.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 113.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 110.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 109.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 109.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 108.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 108.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 107.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 101.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 100.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 94.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 83.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 85.7
FF:10181-103D1 60 years, female 96.8
FF:10159-103A6 76 years, female 74.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 80.4
Samples: 4

Max nTPM: 97.3
Min nTPM: 74.1
Sample A Female 74.1
Sample B Female 75.6
Sample C Male 97.3
Sample D Male 74.6
Ventral spinal cord
nTPM: 81.2
Samples: 4

Max nTPM: 87.5
Min nTPM: 69.3
Sample A Female 69.3
Sample B Female 81.6
Sample C Male 87.5
Sample D Male 86.2

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