MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA Brain:47.4 nTPM
GTEx:27.7 nTPM
FANTOM5:58.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
1827 Male, age 72, unknown 45.5
2019 Male, age 18, unknown 45.2
1870 Female, age 42, unknown 45.0
2411 Female, age 72, unknown 44.9
1830 Male, age 51, unknown 44.0
1833 Male, age 53, unknown 42.5
2828 Female, age 72, unknown 40.1
2666 Male, age 74, left hemisphere 39.6
2219 Male, age 76, both hemispheres 39.2
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 45.3
2298 Female, age 72, unknown 48.8
2750 Male, age 76, both hemispheres 47.0
2016 Female, age 72, unknown 44.5
2047 Male, age 72, unknown 43.4
1828 Male, age 53, unknown 42.6
Inferior colliculus
nTPM: 44.7
2097 Female, age 72, unknown 46.9
1848 Female, age 42, unknown 45.6
1890 Male, age 53, unknown 45.1
2849 Male, age 72, unknown 41.2
Median raphe nucleus
nTPM: 47.4
2220 Male, age 76, midline 47.4
Periaquaductal grey, anterior
nTPM: 46.1
1947 Male, age 18, unknown 49.4
2502 Female, age 75, unknown 46.9
1795 Male, age 51, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 43.7
2850 Male, age 76, both hemispheres 45.8
2464 Female, age 72, unknown 44.0
1831 Male, age 72, unknown 43.0
1840 Male, age 53, unknown 41.9
Periaquaductal grey, lateral
nTPM: 46.0
2272 Male, age 74, both hemispheres 49.7
2140 Male, age 76, both hemispheres 44.4
2053 Male, age 18, unknown 43.8
Pretectal area
nTPM: 45.7
2273 Male, age 74, both hemispheres 50.7
1816 Male, age 51, unknown 48.4
1815 Male, age 53, unknown 48.2
1817 Female, age 42, unknown 48.1
2316 Male, age 76, right hemisphere 46.0
2224 Female, age 72, unknown 45.2
2007 Male, age 72, unknown 45.1
2667 Female, age 75, unknown 44.3
1944 Female, age 72, unknown 43.9
2825 Male, age 18, unknown 41.7
2407 Male, age 75, both hemispheres 41.1
Red nucleus
nTPM: 45.1
1821 Female, age 72, unknown 53.5
1954 Female, age 42, unknown 47.7
1865 Male, age 51, unknown 47.0
2725 Female, age 75, unknown 45.9
2503 Female, age 72, unknown 45.6
1904 Male, age 53, unknown 45.4
2227 Male, age 72, unknown 44.5
2769 Male, age 72, unknown 44.4
2823 Male, age 76, right hemisphere 43.2
2785 Male, age 18, unknown 42.7
2588 Male, age 74, left hemisphere 42.4
2584 Male, age 75, left hemisphere 38.2
Substantia nigra
nTPM: 46.8
2241 Male, age 72, unknown 51.4
1916 Female, age 42, unknown 49.4
2590 Female, age 75, unknown 48.0
1851 Male, age 51, unknown 47.4
2409 Female, age 72, unknown 47.1
2665 Male, age 74, both hemispheres 46.1
1941 Male, age 53, unknown 45.5
1889 Female, age 72, unknown 45.4
2699 Male, age 18, unknown 44.9
2583 Male, age 75, right hemisphere 42.4
Superior colliculus
nTPM: 44.5
2261 Male, age 18, unknown 48.6
2087 Female, age 72, unknown 46.2
1913 Female, age 42, unknown 46.0
2587 Male, age 74, left hemisphere 44.8
1995 Male, age 72, unknown 44.4
1839 Male, age 51, unknown 44.3
1796 Male, age 53, unknown 43.3
1895 Male, age 76, right hemisphere 43.2
2668 Female, age 75, unknown 42.9
2664 Male, age 75, both hemispheres 41.7
Ventral tegmental area
nTPM: 45.6
2021 Male, age 53, unknown 49.0
2223 Female, age 72, unknown 46.7
2410 Female, age 72, unknown 45.6
1915 Female, age 42, unknown 45.1
2218 Male, age 76, both hemispheres 44.4
1942 Male, age 51, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.7
Samples: 139

Max nTPM: 45.0
Min nTPM: 19.5
Std nTPM: 5.2
Median nTPM: 26.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 45.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 44.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 43.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 42.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 41.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 38.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 38.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 37.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 36.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.8
FF:10158-103A5 76 years, female 58.8

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