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ATP5IF1
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  • ATP5IF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:309.1 nTPM
FANTOM5:534.0 Scaled Tags Per Million
Pig:218.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027999
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 309.1
Samples: 246

Max nTPM: 827.5
Min nTPM: 107.2
Std nTPM: 120.1
Median nTPM: 298.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 827.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 726.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 698.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 691.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 671.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 669.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 627.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 588.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 585.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 566.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 542.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 535.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 515.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 502.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 494.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 493.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 483.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 481.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 480.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 469.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 468.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 468.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 463.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 460.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 455.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 451.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 450.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 449.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 444.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 443.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 442.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 442.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 435.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 433.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 431.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 420.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 419.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 418.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 417.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 414.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 399.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 398.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 398.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 396.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 394.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 392.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 392.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 391.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 390.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 390.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 388.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 386.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 386.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 382.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 377.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 376.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 373.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 370.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 370.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 369.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 367.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 365.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 364.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 363.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 362.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 360.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 359.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 358.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 358.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 357.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 354.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 353.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 352.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 350.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 349.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 347.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 346.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 346.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 345.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 345.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 345.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 344.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 342.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 341.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 340.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 339.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 339.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 337.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 337.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 332.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 331.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 331.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 330.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 330.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 328.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 326.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 324.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 323.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 323.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 323.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 319.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 317.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 316.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 314.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 313.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 311.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 310.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 310.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 310.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 309.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 309.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 309.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 307.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 306.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 304.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 303.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 303.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 300.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 300.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 300.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 300.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 299.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 298.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 298.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 297.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 296.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 294.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 293.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 292.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 289.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 288.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 288.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 288.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 287.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 287.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 287.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 286.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 286.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 286.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 285.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 284.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 281.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 281.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 280.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 280.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 276.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 276.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 275.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 273.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 273.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 268.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 267.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 265.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 263.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 262.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 261.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 261.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 260.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 260.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 258.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 258.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 258.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 255.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 250.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 249.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 247.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 247.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 247.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 246.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 244.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 243.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 242.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 240.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 240.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 237.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 236.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 235.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 229.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 228.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 226.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 225.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 225.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 224.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 223.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 223.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 222.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 222.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 220.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 217.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 216.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 215.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 213.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 211.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 211.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 208.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 208.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 206.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 204.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 203.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 198.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 195.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 194.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 194.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 189.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 188.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 187.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 186.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 184.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 182.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 180.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 179.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 178.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 178.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 177.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 176.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 176.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 174.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 173.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 171.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 166.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 164.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 163.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 163.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 161.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 161.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 160.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 160.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 159.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 157.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 157.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 153.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 152.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 150.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 146.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 146.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 143.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 142.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 141.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 139.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 136.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 134.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 131.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 129.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 126.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 121.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 107.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

534.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 534.0
FF:10164-103B2 76 years, female 534.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.9
Pig sample Sample description nTPM
Caudate
nTPM: 218.9
Samples: 4

Max nTPM: 250.6
Min nTPM: 201.6
Sample A Female 209.5
Sample B Female 214.0
Sample C Male 250.6
Sample D Male 201.6

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