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ATP5IF1
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  • ATP5IF1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:215.1 nTPM
HPA Brain:35.5 nTPM
GTEx:215.1 nTPM
FANTOM5:348.7 Scaled Tags Per Million
Pig:250.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 30.8
2194 Female, age 79, both hemispheres 41.1
1981 Female, age 72, midline 34.0
2048 Male, age 55, midline 26.8
2816 Male, age 47, midline 26.3
2565 Male, age 75, midline 25.8
Cervical spinal cord, dorsal horn
nTPM: 35.5
2721 Male, age 90, both hemispheres 39.9
2173 Female, age 72, unknown 38.6
2069 Male, age 47, both hemispheres 36.6
1877 Male, age 55, unknown 33.2
2297 Male, age 75, both hemispheres 32.7
2296 Male, age 66, both hemispheres 32.0
Cervical spinal cord, ventral horn
nTPM: 29.6
2068 Male, age 55, unknown 41.7
2820 Female, age 79, both hemispheres 31.9
2480 Male, age 75, both hemispheres 29.1
2295 Male, age 66, both hemispheres 27.5
2098 Female, age 72, unknown 24.1
2809 Male, age 90, both hemispheres 23.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 215.1
Samples: 159

Max nTPM: 439.6
Min nTPM: 116.5
Std nTPM: 54.5
Median nTPM: 206.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 439.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 386.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 352.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 344.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 337.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 332.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 326.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 321.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 309.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 306.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 306.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 304.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 304.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 304.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 298.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 296.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 281.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 280.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 275.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 274.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 271.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 269.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 268.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 267.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 267.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 266.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 265.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 260.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 259.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 257.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 256.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 252.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 250.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 249.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 248.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 248.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 247.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 244.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 244.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 243.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 241.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 240.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 239.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 239.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 239.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 238.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 238.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 238.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 235.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 235.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 234.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 234.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 233.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 232.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 231.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 230.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 227.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 226.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 225.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 224.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 223.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 223.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 223.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 222.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 221.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 218.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 215.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 214.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 213.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 213.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 213.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 212.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 210.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 209.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 209.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 207.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 207.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 207.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 206.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 205.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 204.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 204.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 203.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 202.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 201.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 201.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 201.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 200.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 199.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 199.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 199.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 198.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 197.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 197.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 197.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 195.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 191.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 190.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 190.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 190.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 188.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 188.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 187.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 186.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 185.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 185.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 185.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 184.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 183.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 183.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 182.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 182.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 180.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 179.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 179.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 178.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 177.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 177.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 174.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 174.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 172.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 171.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 171.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 170.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 170.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 169.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 169.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 168.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 166.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 165.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 163.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 163.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 162.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 162.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 160.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 160.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 158.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 155.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 152.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 151.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 151.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 151.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 150.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 147.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 147.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 145.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 144.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 140.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 134.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 131.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 130.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 127.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 126.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 125.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 118.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 116.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

348.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 348.7
FF:10181-103D1 60 years, female 485.9
FF:10159-103A6 76 years, female 211.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 198.5
Samples: 4

Max nTPM: 222.4
Min nTPM: 181.3
Sample A Female 203.1
Sample B Female 181.3
Sample C Male 222.4
Sample D Male 187.2
Ventral spinal cord
nTPM: 250.3
Samples: 4

Max nTPM: 305.4
Min nTPM: 196.0
Sample A Female 196.0
Sample B Female 276.7
Sample C Male 305.4
Sample D Male 223.0

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