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ATP5IF1
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  • ATP5IF1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:194.1 nTPM
HPA:121.3 nTPM
GTEx:194.1 nTPM
FANTOM5:635.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027999
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.3
overview
Male, age 65
Small intestine sample 232
nTPM: 149.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 122.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 114.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 98.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 194.1
Samples: 187

Max nTPM: 429.5
Min nTPM: 79.1
Std nTPM: 73.0
Median nTPM: 175.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 429.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 369.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 353.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 350.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 341.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 338.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 334.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 329.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 324.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 316.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 315.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 314.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 313.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 306.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 305.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 305.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 304.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 304.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 302.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 301.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 301.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 300.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 299.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 297.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 297.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 297.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 297.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 295.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 294.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 279.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 279.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 278.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 278.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 276.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 273.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 272.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 271.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 271.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 270.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 265.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 263.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 263.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 260.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 259.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 256.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 256.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 256.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 250.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 250.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 246.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 238.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 237.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 235.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 234.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 233.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 228.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 226.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 226.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 226.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 225.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 220.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 219.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 219.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 217.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 217.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 216.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 215.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 215.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 213.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 212.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 212.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 208.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 207.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 204.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 204.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 203.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 201.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 197.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 195.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 194.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 194.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 193.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 192.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 191.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 189.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 187.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 185.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 184.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 182.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 181.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 178.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 177.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 176.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 175.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 175.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 173.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 171.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 171.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 170.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 170.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 169.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 165.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 164.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 164.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 164.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 163.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 160.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 156.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 156.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 155.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 154.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 154.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 153.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 152.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 151.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 151.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 151.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 150.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 150.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 149.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 148.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 148.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 147.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 147.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 145.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 144.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 143.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 141.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 141.0
GTEX-1192X-2526-SM-59868 50-59 years, male 140.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 140.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 140.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 139.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 139.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 137.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 137.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 133.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 132.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 132.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 132.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 130.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 130.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 130.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 130.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 130.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 129.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 128.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 128.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 127.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 126.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 125.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 124.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 123.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 122.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 122.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 122.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 122.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 121.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 121.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 120.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 120.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 119.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 119.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 118.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 117.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 117.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 115.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 113.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 112.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 112.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 112.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 110.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 109.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 109.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 108.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 108.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 105.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 104.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 101.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 100.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 99.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 99.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 94.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 89.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 89.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 86.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 79.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

635.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 635.4
FF:10024-101D6 15,40,85 years, mixed 635.4

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