We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
COX4I1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • COX4I1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:856.0 nTPM
FANTOM5:374.6 Scaled Tags Per Million
Pig:604.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002485Antibody CAB004080
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

856.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 856.0
Samples: 246

Max nTPM: 2268.2
Min nTPM: 316.7
Std nTPM: 276.2
Median nTPM: 819.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2268.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2008.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1999.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1909.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1868.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1671.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1631.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1629.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1558.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1363.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1361.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1343.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1283.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1280.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1261.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1257.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1253.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1249.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1243.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1240.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1229.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1171.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1163.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1120.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1115.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1105.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1101.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1097.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1095.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1086.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1082.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1080.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1078.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1073.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1068.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1066.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1065.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1062.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1059.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1054.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1054.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1053.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1052.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1046.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1044.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1041.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1039.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1029.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1013.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1002.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 984.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 982.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 981.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 977.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 974.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 971.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 967.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 964.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 963.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 963.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 959.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 958.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 954.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 951.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 940.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 937.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 936.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 936.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 934.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 932.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 931.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 928.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 924.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 923.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 922.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 921.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 919.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 916.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 913.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 912.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 911.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 910.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 909.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 904.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 902.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 899.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 898.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 894.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 893.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 891.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 885.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 883.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 882.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 882.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 881.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 880.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 875.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 873.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 872.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 871.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 868.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 866.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 865.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 863.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 860.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 857.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 855.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 853.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 844.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 843.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 843.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 841.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 841.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 839.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 839.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 835.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 832.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 830.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 829.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 825.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 824.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 824.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 822.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 816.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 812.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 812.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 811.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 807.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 807.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 807.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 804.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 801.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 799.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 793.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 793.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 793.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 792.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 792.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 791.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 789.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 787.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 786.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 780.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 775.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 775.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 771.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 766.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 763.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 758.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 756.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 752.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 752.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 750.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 746.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 741.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 740.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 740.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 736.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 735.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 734.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 734.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 732.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 728.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 728.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 726.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 722.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 722.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 719.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 718.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 717.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 717.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 716.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 714.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 713.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 699.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 697.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 696.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 690.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 687.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 686.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 684.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 684.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 680.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 679.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 678.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 678.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 676.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 674.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 672.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 671.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 670.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 668.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 655.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 652.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 652.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 648.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 646.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 645.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 641.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 637.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 636.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 636.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 633.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 630.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 628.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 626.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 624.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 623.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 621.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 615.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 614.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 612.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 610.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 609.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 606.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 599.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 596.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 595.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 589.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 586.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 581.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 579.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 577.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 569.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 565.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 559.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 557.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 557.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 549.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 547.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 547.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 541.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 538.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 536.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 533.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 513.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 509.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 509.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 501.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 474.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 459.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 449.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 419.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 408.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 392.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 316.7
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

374.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 374.6
FF:10164-103B2 76 years, female 374.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

604.4
Pig sample Sample description nTPM
Caudate
nTPM: 604.4
Samples: 4

Max nTPM: 763.0
Min nTPM: 497.8
Sample A Female 516.6
Sample B Female 640.0
Sample C Male 763.0
Sample D Male 497.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org