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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:514.7 nTPM
HPA:480.3 nTPM
GTEx:514.7 nTPM
FANTOM5:499.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002485Antibody CAB004080
Glandular cells HighMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

480.3
overview
Male, age 65
Small intestine sample 232
nTPM: 534.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 487.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 385.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 513.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

514.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 514.7
Samples: 187

Max nTPM: 1102.6
Min nTPM: 232.7
Std nTPM: 164.3
Median nTPM: 481.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1102.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 951.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 936.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 930.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 925.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 912.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 894.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 866.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 849.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 842.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 814.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 789.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 777.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 772.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 764.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 758.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 755.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 752.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 745.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 725.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 718.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 711.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 704.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 697.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 693.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 691.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 688.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 687.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 684.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 684.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 673.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 671.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 671.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 667.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 663.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 660.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 655.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 654.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 646.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 645.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 642.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 638.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 636.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 631.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 631.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 629.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 627.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 627.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 624.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 624.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 611.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 610.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 606.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 602.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 600.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 596.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 595.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 592.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 588.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 576.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 573.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 570.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 568.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 565.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 559.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 557.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 553.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 552.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 552.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 546.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 542.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 535.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 532.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 532.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 531.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 531.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 527.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 526.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 520.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 520.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 519.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 516.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 506.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 504.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 502.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 499.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 497.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 495.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 494.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 494.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 489.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 485.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 482.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 481.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 480.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 479.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 478.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 478.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 476.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 476.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 476.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 473.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 469.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 468.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 465.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 461.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 460.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 458.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 454.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 443.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 443.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 440.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 439.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 439.1
GTEX-1192X-2526-SM-59868 50-59 years, male 438.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 437.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 433.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 432.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 426.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 424.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 423.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 417.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 416.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 415.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 413.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 413.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 412.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 410.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 405.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 404.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 403.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 402.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 395.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 395.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 395.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 391.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 390.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 389.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 389.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 387.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 381.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 380.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 380.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 380.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 379.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 374.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 371.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 371.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 370.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 368.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 367.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 355.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 354.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 354.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 352.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 352.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 349.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 349.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 348.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 344.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 343.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 342.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 341.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 340.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 337.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 336.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 334.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 333.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 331.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 330.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 325.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 325.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 324.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 322.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 320.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 320.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 319.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 311.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 303.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 303.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 299.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 291.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 287.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 272.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 257.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 249.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 232.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

499.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 499.3
FF:10024-101D6 15,40,85 years, mixed 499.3

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