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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

122.998
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:231.4 nTPM
HPA Brain:235.2 nTPM
GTEx:231.4 nTPM
FANTOM5:216.3 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:156.2 nTPM
Allen mouse:20.8 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA048630
Amygdala mean intensity 122.998
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 82.945
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 61.041
Cortical amygdala 96.648
Central amygdala 91.582
Medial amygdaloid nucleus 122.998

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.2
Sample id Sample description nTPM
Amygdala
nTPM: 235.2
2695 Female, age 67, right hemisphere 420.3
2814 Male, age 76, right hemisphere 252.7
1987 Female, age 91, left hemisphere 175.3
2514 Male, age 75, right hemisphere 166.7
2517 Female, age 94, left hemisphere 161.2
Basal amygdala
nTPM: 190.2
2609 Male, age 75, right hemisphere 314.9
2243 Female, age 91, right hemisphere 232.5
1955 Male, age 76, both hemispheres 170.3
2110 Male, age 80, left hemisphere 165.8
2685 Female, age 94, left hemisphere 149.3
2827 Female, age 67, right hemisphere 108.7
Central amygdala
nTPM: 187.3
1905 Male, age 76, both hemispheres 246.0
2515 Male, age 75, right hemisphere 214.9
2826 Female, age 94, left hemisphere 174.1
2239 Male, age 80, left hemisphere 150.7
2701 Female, age 91, right hemisphere 150.7
Corticomedial amygdala
nTPM: 196.3
2829 Male, age 80, left hemisphere 318.3
2428 Male, age 75, right hemisphere 220.8
2242 Female, age 91, right hemisphere 198.9
2240 Male, age 76, both hemispheres 162.5
2535 Female, age 67, right hemisphere 138.7
2429 Female, age 94, left hemisphere 138.6
Lateral amygdala
nTPM: 176.2
2516 Male, age 75, right hemisphere 250.0
1883 Male, age 76, both hemispheres 197.5
2256 Male, age 80, left hemisphere 195.8
2255 Female, age 91, right hemisphere 170.6
2534 Female, age 94, left hemisphere 142.4
2830 Female, age 67, right hemisphere 100.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 231.4
Samples: 152

Max nTPM: 691.9
Min nTPM: 8.5
Std nTPM: 98.0
Median nTPM: 218.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 691.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 652.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 459.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 446.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 445.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 416.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 394.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 394.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 379.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 377.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 375.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 374.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 368.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 356.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 355.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 351.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 350.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 348.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 348.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 342.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 338.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 335.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 323.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 318.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 306.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 305.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 303.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 301.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 297.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 292.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 290.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 289.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 287.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 283.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 281.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 279.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 278.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 278.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 275.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 274.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 273.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 271.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 265.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 265.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 265.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 259.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 258.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 257.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 257.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 255.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 251.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 250.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 249.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 248.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 248.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 243.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 242.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 241.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 240.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 236.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 236.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 235.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 232.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 232.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 231.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 231.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 230.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 226.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 224.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 224.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 222.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 222.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 220.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 219.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 218.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 218.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 217.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 217.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 216.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 215.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 215.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 215.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 210.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 210.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 208.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 207.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 204.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 202.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 202.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 202.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 202.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 201.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 199.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 199.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 199.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 199.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 196.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 195.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 194.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 194.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 194.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 194.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 192.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 191.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 188.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 185.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 184.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 183.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 183.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 182.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 181.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 177.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 173.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 172.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 170.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 166.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 164.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 159.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 158.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 158.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 156.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 154.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 154.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 151.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 150.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 148.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 143.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 142.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 140.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 138.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 132.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 129.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 127.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 125.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 115.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 110.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 100.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 100.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 98.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 92.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 92.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 91.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 91.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 51.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 28.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

216.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 216.3
FF:10151-102I7 76 years, female 216.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.8
Pig sample Sample description nTPM
Amygdala
nTPM: 42.8
Samples: 4

Max nTPM: 49.7
Min nTPM: 25.2
Sample A Female 48.6
Sample B Female 47.6
Sample C Male 25.2
Sample D Male 49.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 156.2
Samples: 4

Max nTPM: 211.0
Min nTPM: 100.8
Sample A Male 100.8
Sample B Male 155.3
Sample C Female 211.0
Sample D Female 157.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.8
576432 Antisense, RP_040826_01_H06, Mouse strain C57BL/6J (56 days, male) 23.0
73732146 Antisense, RP_051121_04_A04, Mouse strain C57BL/6J (56 days, male) 18.5

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