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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:181.8 nTPM
HPA Brain:127.4 nTPM
GTEx:181.8 nTPM
FANTOM5:77.6 Scaled Tags Per Million
Pig:90.5 nTPM
Mouse:60.3 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.4
Sample id Sample description nTPM
Amygdala
nTPM: 125.4
2695 Female, age 67, right hemisphere 140.7
1987 Female, age 91, left hemisphere 139.3
2514 Male, age 75, right hemisphere 122.3
2517 Female, age 94, left hemisphere 114.5
2814 Male, age 76, right hemisphere 110.3
Basal amygdala
nTPM: 116.9
2609 Male, age 75, right hemisphere 165.3
2243 Female, age 91, right hemisphere 141.0
2110 Male, age 80, left hemisphere 114.5
1955 Male, age 76, both hemispheres 109.3
2685 Female, age 94, left hemisphere 99.8
2827 Female, age 67, right hemisphere 71.6
Central amygdala
nTPM: 126.0
2515 Male, age 75, right hemisphere 164.3
2826 Female, age 94, left hemisphere 140.4
1905 Male, age 76, both hemispheres 116.9
2239 Male, age 80, left hemisphere 111.2
2701 Female, age 91, right hemisphere 97.1
Corticomedial amygdala
nTPM: 127.4
2242 Female, age 91, right hemisphere 184.5
2829 Male, age 80, left hemisphere 158.2
2428 Male, age 75, right hemisphere 141.5
2240 Male, age 76, both hemispheres 98.0
2429 Female, age 94, left hemisphere 91.6
2535 Female, age 67, right hemisphere 90.8
Lateral amygdala
nTPM: 106.3
2516 Male, age 75, right hemisphere 128.0
2256 Male, age 80, left hemisphere 119.7
2255 Female, age 91, right hemisphere 115.6
2534 Female, age 94, left hemisphere 112.3
1883 Male, age 76, both hemispheres 97.0
2830 Female, age 67, right hemisphere 65.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 181.8
Samples: 152

Max nTPM: 419.8
Min nTPM: 14.8
Std nTPM: 70.2
Median nTPM: 171.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 419.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 366.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 359.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 355.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 352.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 342.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 330.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 328.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 322.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 310.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 310.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 291.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 286.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 286.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 285.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 274.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 271.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 262.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 262.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 257.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 255.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 254.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 251.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 247.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 245.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 243.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 242.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 240.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 238.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 238.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 236.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 235.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 233.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 233.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 231.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 224.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 222.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 220.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 217.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 216.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 216.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 213.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 213.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 213.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 211.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 209.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 206.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 203.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 198.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 197.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 197.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 196.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 194.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 194.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 193.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 192.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 192.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 190.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 189.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 189.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 188.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 182.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 182.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 180.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 179.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 178.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 178.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 177.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 174.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 174.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 174.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 173.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 171.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 170.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 170.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 169.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 168.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 167.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 167.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 167.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 166.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 163.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 162.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 161.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 160.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 158.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 158.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 157.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 156.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 155.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 155.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 154.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 151.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 151.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 150.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 149.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 148.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 147.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 143.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 140.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 139.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 139.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 138.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 138.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 137.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 135.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 134.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 134.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 132.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 128.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 127.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 126.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 126.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 125.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 120.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 120.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 120.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 118.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 116.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 116.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 115.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 115.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 111.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 102.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 99.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 98.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 98.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 97.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 92.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 92.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 90.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 88.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 87.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 86.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 85.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 84.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 73.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 70.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

77.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 77.6
FF:10151-102I7 76 years, female 77.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.5
Pig sample Sample description nTPM
Amygdala
nTPM: 90.5
Samples: 4

Max nTPM: 112.0
Min nTPM: 61.0
Sample A Female 112.0
Sample B Female 100.8
Sample C Male 88.2
Sample D Male 61.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 60.3
Samples: 4

Max nTPM: 69.2
Min nTPM: 53.7
Sample A Male 53.7
Sample B Male 56.9
Sample C Female 69.2
Sample D Female 61.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
1912 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.6
1913 Antisense, RP_040428_01_C05, Mouse strain C57BL/6J (56 days, male) 0.1
68498944 Antisense, RP_050113_02_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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