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H3-3B
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  • H3-3B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:313.3 nTPM
FANTOM5:225.5 Scaled Tags Per Million
Pig:15.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042570Antibody CAB037166Antibody CAB037187Antibody CAB037221
Glial cells HighHighHighHigh
Neuronal cells HighMediumMediumMedium









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 313.3
Samples: 246

Max nTPM: 858.3
Min nTPM: 123.5
Std nTPM: 92.9
Median nTPM: 288.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 858.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 760.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 625.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 569.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 537.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 537.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 520.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 518.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 517.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 497.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 491.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 476.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 475.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 474.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 470.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 467.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 466.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 461.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 453.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 451.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 449.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 448.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 437.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 422.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 422.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 415.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 412.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 412.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 410.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 409.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 408.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 406.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 403.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 395.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 395.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 393.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 392.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 390.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 389.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 388.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 387.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 386.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 385.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 384.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 383.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 382.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 380.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 377.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 375.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 375.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 367.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 367.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 366.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 365.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 362.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 362.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 362.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 362.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 359.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 358.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 357.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 355.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 355.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 355.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 354.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 354.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 353.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 352.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 352.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 352.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 351.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 350.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 349.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 346.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 345.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 340.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 334.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 334.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 333.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 332.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 331.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 331.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 331.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 330.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 329.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 328.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 326.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 325.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 325.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 324.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 324.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 324.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 323.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 322.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 322.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 320.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 320.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 320.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 319.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 317.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 316.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 315.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 312.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 311.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 310.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 309.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 307.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 307.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 307.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 306.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 305.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 304.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 304.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 303.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 301.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 300.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 295.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 295.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 295.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 295.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 292.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 289.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 289.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 288.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 288.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 288.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 287.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 287.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 287.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 286.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 286.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 285.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 285.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 283.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 283.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 282.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 281.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 281.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 280.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 280.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 279.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 278.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 276.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 276.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 276.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 276.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 273.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 272.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 270.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 268.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 267.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 267.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 267.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 267.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 267.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 266.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 265.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 265.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 265.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 264.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 264.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 262.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 261.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 261.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 260.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 260.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 258.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 258.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 257.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 257.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 257.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 257.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 256.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 256.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 256.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 256.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 256.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 255.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 254.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 254.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 254.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 254.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 253.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 253.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 252.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 252.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 252.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 252.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 251.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 250.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 250.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 250.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 248.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 246.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 244.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 244.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 244.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 244.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 243.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 243.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 242.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 242.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 239.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 239.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 239.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 238.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 237.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 237.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 237.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 235.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 235.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 235.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 233.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 233.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 233.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 233.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 232.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 230.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 228.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 228.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 228.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 225.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 225.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 223.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 219.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 218.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 216.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 214.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 212.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 210.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 209.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 209.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 208.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 208.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 206.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 203.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 202.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 202.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 201.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 196.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 189.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 188.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 188.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 148.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 139.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 123.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

225.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 225.5
FF:10164-103B2 76 years, female 225.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.5
Pig sample Sample description nTPM
Caudate
nTPM: 15.5
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.7
Sample A Female 15.2
Sample B Female 13.7
Sample C Male 15.0
Sample D Male 18.0

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