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H3-3B
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  • H3-3B
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:395.7 nTPM
HPA:395.7 nTPM
GTEx:353.4 nTPM
FANTOM5:379.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042570Antibody CAB037166Antibody CAB037187Antibody CAB037221
Glandular cells HighHighHighMedium








SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.7
overview
Male, age 65
Small intestine sample 232
nTPM: 374.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 347.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 410.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 450.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 353.4
Samples: 187

Max nTPM: 750.0
Min nTPM: 165.2
Std nTPM: 89.6
Median nTPM: 341.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 750.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 625.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 620.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 564.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 554.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 553.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 550.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 549.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 528.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 516.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 514.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 507.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 489.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 486.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 477.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 476.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 475.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 470.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 460.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 459.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 459.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 457.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 456.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 455.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 447.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 447.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 446.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 443.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 439.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 438.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 437.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 435.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 427.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 426.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 419.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 418.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 418.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 418.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 417.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 417.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 416.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 414.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 411.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 410.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 409.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 406.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 403.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 401.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 401.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 398.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 395.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 394.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 393.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 392.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 390.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 389.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 388.1
GTEX-1192X-2526-SM-59868 50-59 years, male 387.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 386.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 385.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 383.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 383.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 383.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 380.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 375.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 374.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 373.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 373.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 369.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 369.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 367.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 366.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 365.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 364.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 361.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 360.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 360.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 356.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 355.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 354.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 353.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 352.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 352.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 351.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 350.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 349.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 349.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 349.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 348.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 345.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 345.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 343.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 343.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 341.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 337.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 337.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 335.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 334.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 334.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 333.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 332.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 332.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 331.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 330.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 329.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 329.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 326.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 326.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 324.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 322.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 321.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 320.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 319.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 318.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 318.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 315.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 315.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 315.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 315.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 315.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 314.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 312.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 311.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 310.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 310.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 309.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 309.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 307.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 306.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 303.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 303.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 303.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 302.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 302.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 301.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 298.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 295.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 295.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 294.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 293.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 293.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 292.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 288.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 288.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 287.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 287.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 286.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 284.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 283.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 282.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 281.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 279.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 278.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 275.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 275.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 273.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 270.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 269.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 267.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 265.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 264.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 263.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 261.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 259.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 259.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 259.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 257.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 254.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 252.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 252.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 251.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 251.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 250.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 246.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 241.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 239.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 238.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 232.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 232.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 213.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 211.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 207.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 204.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 196.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 191.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 172.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 165.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

379.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 379.5
FF:10024-101D6 15,40,85 years, mixed 379.5

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