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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:180.0 nTPM
HPA Brain:77.2 nTPM
GTEx:180.0 nTPM
FANTOM5:148.8 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.2
Sample id Sample description nTPM
Amygdala
nTPM: 77.2
2814 Male, age 76, right hemisphere 86.2
2695 Female, age 67, right hemisphere 76.7
2514 Male, age 75, right hemisphere 75.8
1987 Female, age 91, left hemisphere 74.6
2517 Female, age 94, left hemisphere 72.8
Basal amygdala
nTPM: 72.0
2609 Male, age 75, right hemisphere 77.0
2110 Male, age 80, left hemisphere 75.4
2685 Female, age 94, left hemisphere 73.4
1955 Male, age 76, both hemispheres 69.8
2827 Female, age 67, right hemisphere 68.4
2243 Female, age 91, right hemisphere 68.0
Central amygdala
nTPM: 74.7
2826 Female, age 94, left hemisphere 80.6
1905 Male, age 76, both hemispheres 78.2
2515 Male, age 75, right hemisphere 77.0
2239 Male, age 80, left hemisphere 73.0
2701 Female, age 91, right hemisphere 64.8
Corticomedial amygdala
nTPM: 71.1
2829 Male, age 80, left hemisphere 81.2
2428 Male, age 75, right hemisphere 76.0
2429 Female, age 94, left hemisphere 74.0
2242 Female, age 91, right hemisphere 70.0
2535 Female, age 67, right hemisphere 62.9
2240 Male, age 76, both hemispheres 62.3
Lateral amygdala
nTPM: 72.3
2534 Female, age 94, left hemisphere 81.9
1883 Male, age 76, both hemispheres 81.7
2516 Male, age 75, right hemisphere 76.4
2256 Male, age 80, left hemisphere 69.6
2830 Female, age 67, right hemisphere 64.1
2255 Female, age 91, right hemisphere 60.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 180.0
Samples: 152

Max nTPM: 324.3
Min nTPM: 118.0
Std nTPM: 36.8
Median nTPM: 176.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 324.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 319.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 298.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 289.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 284.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 267.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 244.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 242.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 242.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 240.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 239.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 233.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 232.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 232.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 231.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 229.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 228.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 226.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 222.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 217.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 212.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 212.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 210.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 208.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 208.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 208.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 203.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 203.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 200.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 200.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 198.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 197.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 195.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 195.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 195.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 194.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 194.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 193.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 193.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 192.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 192.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 191.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 191.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 191.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 190.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 190.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 188.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 188.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 187.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 187.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 186.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 185.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 185.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 185.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 185.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 185.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 184.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 184.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 184.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 182.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 182.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 182.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 181.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 181.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 181.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 180.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 179.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 179.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 178.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 177.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 177.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 176.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 176.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 176.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 175.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 175.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 172.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 172.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 172.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 171.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 170.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 169.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 169.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 168.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 168.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 168.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 167.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 166.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 166.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 166.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 166.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 165.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 165.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 165.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 164.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 163.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 162.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 162.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 161.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 161.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 161.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 161.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 161.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 160.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 160.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 159.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 158.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 158.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 157.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 156.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 156.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 155.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 155.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 154.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 154.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 152.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 151.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 151.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 150.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 149.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 147.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 147.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 145.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 144.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 144.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 144.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 142.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 141.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 141.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 140.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 139.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 139.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 135.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 135.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 132.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 132.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 129.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 128.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 124.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 119.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 118.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 118.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

148.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 148.8
FF:10151-102I7 76 years, female 148.8

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