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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:146.9 nTPM
HPA Brain:87.1 nTPM
GTEx:146.9 nTPM
FANTOM5:112.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 78.7
1981 Female, age 72, midline 85.1
2565 Male, age 75, midline 84.2
2194 Female, age 79, both hemispheres 79.9
2816 Male, age 47, midline 75.0
2048 Male, age 55, midline 69.2
Cervical spinal cord, dorsal horn
nTPM: 77.8
2173 Female, age 72, unknown 87.5
2297 Male, age 75, both hemispheres 80.4
2296 Male, age 66, both hemispheres 78.0
2069 Male, age 47, both hemispheres 76.0
1877 Male, age 55, unknown 72.6
2721 Male, age 90, both hemispheres 71.9
Cervical spinal cord, ventral horn
nTPM: 87.1
2809 Male, age 90, both hemispheres 91.6
2295 Male, age 66, both hemispheres 91.0
2098 Female, age 72, unknown 89.6
2480 Male, age 75, both hemispheres 87.9
2068 Male, age 55, unknown 81.3
2820 Female, age 79, both hemispheres 81.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 146.9
Samples: 159

Max nTPM: 237.7
Min nTPM: 94.3
Std nTPM: 24.7
Median nTPM: 141.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 237.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 228.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 215.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 215.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 212.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 208.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 201.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 190.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 188.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 188.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 187.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 184.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 180.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 180.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 179.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 178.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 176.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 174.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 174.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 174.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 173.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 173.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 173.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 172.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 171.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 169.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 169.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 169.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 168.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 166.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 166.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 165.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 165.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 165.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 163.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 162.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 161.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 161.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 161.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 160.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 160.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 159.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 159.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 157.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 156.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 156.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 156.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 155.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 155.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 155.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 155.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 155.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 154.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 154.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 153.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 152.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 151.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 151.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 150.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 150.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 149.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 148.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 148.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 148.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 145.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 145.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 145.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 144.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 144.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 144.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 144.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 143.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 143.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 143.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 142.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 142.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 142.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 141.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 141.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 140.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 140.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 140.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 140.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 140.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 139.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 139.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 139.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 139.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 139.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 139.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 138.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 138.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 138.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 137.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 137.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 137.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 136.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 135.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 135.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 135.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 135.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 134.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 134.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 133.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 133.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 132.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 132.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 132.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 131.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 130.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 130.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 129.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 129.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 129.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 128.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 128.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 127.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 127.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 127.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 127.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 127.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 127.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 127.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 126.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 126.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 126.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 125.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 125.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 125.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 125.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 124.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 121.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 121.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 119.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 119.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 118.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 117.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 117.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 115.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 112.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 112.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 111.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 111.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 110.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 109.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 107.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 107.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 94.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 112.9
FF:10159-103A6 76 years, female 126.9
FF:10181-103D1 60 years, female 98.8

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