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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

53.374
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:844.0 nTPM
GTEx:948.1 nTPM
FANTOM5:1703.8 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001830Antibody HPA071013Antibody CAB000360
Glial cells LowNot detectedNot detected
Neuronal cells MediumNot detectedNot detected







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA001830
Hippocampal formation mean intensity 53.374
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 4.936
Molecular layer of the dentate gyrus 31.861
Granular dentate gyrus 1.105
CA1 - oriens layer 39.657
CA1 - pyramidal layer 11.590
CA1 - radiatum layer 39.047
CA2 - oriens layer 36.576
CA2 - pyramidal layer 24.831
CA2 - radiatum layer 43.587
CA3 - oriens layer 29.029
CA3 - pyramidal layer 3.792
CA3 - radiatum layer 23.670
Stratum lucidum 29.082
Lacunosum moleculare 53.374
Subiculum 28.234

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

844.0
Sample id Sample description nTPM
Hippocampus
nTPM: 844.0
1898 Male, age 80, left hemisphere 1286.3
2621 Female, age 67, right hemisphere 1077.3
2148 Female, age 91, left hemisphere 845.1
1855 Male, age 76, left hemisphere 814.4
1911 Female, age 85, right hemisphere 649.3
2529 Female, age 94, left hemisphere 391.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

948.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 948.1
Samples: 197

Max nTPM: 3054.8
Min nTPM: 42.8
Std nTPM: 680.1
Median nTPM: 865.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3054.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2992.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 2793.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 2478.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2466.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2302.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 2215.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2211.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2195.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2155.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2154.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 2108.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 2105.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2100.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2017.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 2006.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1990.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 1978.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1941.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1938.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1930.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1905.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1865.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1847.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1813.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 1774.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1769.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1758.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1741.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 1738.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1727.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 1723.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1707.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 1705.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1647.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1616.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1599.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1594.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1539.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1529.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1523.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1518.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 1476.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1475.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1467.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1457.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 1423.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1421.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 1408.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1399.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1393.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1388.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1387.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1358.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 1342.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1337.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 1313.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1312.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1294.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1280.6
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1257.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1255.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1236.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1235.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 1189.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1187.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1187.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1181.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1155.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 1152.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1129.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1126.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1124.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1123.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1119.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 1111.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 1106.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1077.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1073.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1072.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 1069.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 1053.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1032.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 1025.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 1013.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 993.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 986.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 978.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 972.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 968.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 960.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 958.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 944.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 938.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 938.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 903.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 885.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 883.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 865.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 862.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 854.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 838.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 832.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 828.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 824.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 817.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 792.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 791.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 767.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 766.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 760.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 748.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 725.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 712.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 702.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 691.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 681.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 659.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 631.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 628.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 600.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 571.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 569.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 560.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 555.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 551.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 532.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 524.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 502.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 499.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 493.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 491.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 482.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 467.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 452.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 448.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 440.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 427.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 425.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 424.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 418.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 418.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 380.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 361.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 347.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 329.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 324.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 321.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 316.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 316.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 307.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 301.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 300.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 297.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 296.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 284.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 282.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 278.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 267.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 265.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 263.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 263.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 262.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 237.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 229.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 198.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 195.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 192.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 181.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 169.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 165.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 160.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 155.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 150.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 148.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 147.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 145.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 144.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 140.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 129.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 125.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 115.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 114.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 113.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 106.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 103.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 100.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 100.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 93.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 93.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 92.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 90.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 89.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 60.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 55.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 48.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 42.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1703.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1703.8
FF:10169-103B7 60 years, female 2176.8
FF:10153-102I9 76 years, female 1230.7

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