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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:463.6 nTPM
GTEx:463.6 nTPM
FANTOM5:183.0 Scaled Tags Per Million
Pig:544.2 nTPM
Mouse:1484.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

463.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 463.6
Samples: 105

Max nTPM: 1073.8
Min nTPM: 281.7
Std nTPM: 110.2
Median nTPM:
2_1 77 years, female 1073.8
307_1 66 years, female 880.5
495_1 57 years, female 797.3
139_1 64 years, female 652.2
322_1 76 years, male 600.7
145_1 84 years, male 598.4
89_1 63 years, male 597.3
501_1 88 years, male 591.9
311_1 78 years, male 580.5
6_1 73 years, female 579.1
119_1 70 years, female 577.6
348_1 84 years, male 576.3
413_1 59 years, female 575.9
447_1 81 years, male 571.5
491_1 89 years, female 565.6
117_1 61 years, male 562.3
293_1 68 years, female 561.3
81_1 67 years, male 552.5
17_1 71 years, male 548.1
120_1 70 years, female 532.4
43_1 64 years, female 528.1
324_1 76 years, male 526.7
126_1 63 years, male 526.4
308_1 70 years, female 524.6
321_1 62 years, female 523.2
490_1 67 years, female 512.9
149_1 88 years, male 510.1
4_1 88 years, female 502.8
316_1 62 years, male 500.0
415_1 77 years, female 496.5
162_1 79 years, female 494.7
350_1 84 years, female 493.9
35_1 74 years, female 483.7
18_1 88 years, male 483.4
466_1 57 years, female 483.4
313_1 79 years, female 483.0
518_1 75 years, female 481.5
142_1 61 years, female 480.7
526_1 61 years, male 479.6
115_1 83 years, male 474.7
41_1 94 years, female 474.3
377_1 82 years, female 469.1
153_1 70 years, female 464.2
414_1 84 years, female 454.0
386_1 76 years, male 450.9
109_1 81 years, female 449.8
396_1 62 years, male 447.0
317_1 60 years, male 446.6
353_1 82 years, female 444.8
292_1 71 years, male 442.6
506_1 65 years, male 441.5
315_1 62 years, female 439.2
384_1 83 years, male 434.6
319_1 81 years, male 433.2
468_1 89 years, male 432.9
173_1 67 years, male 432.5
499_1 55 years, female 428.2
9_1 66 years, female 428.0
405_1 91 years, male 426.9
291_1 76 years, male 426.4
254_1 77 years, female 423.9
335_1 73 years, female 423.0
404_1 82 years, female 421.8
32_1 67 years, male 420.2
172_1 72 years, female 419.3
320_1 89 years, female 418.9
266_1 85 years, male 417.6
243_1 75 years, male 416.2
288_1 66 years, female 416.2
314_1 67 years, male 415.5
352_1 62 years, male 413.4
376_1 75 years, female 411.5
406_1 79 years, male 411.2
375_1 74 years, female 410.4
425_1 59 years, female 408.3
480_1 63 years, male 404.2
286_1 68 years, female 403.7
318_1 68 years, male 397.8
217_1 76 years, male 397.1
229_1 69 years, female 395.1
452_1 88 years, female 392.3
237_1 82 years, male 391.2
503_1 68 years, male 387.6
251_1 78 years, male 387.3
177_1 74 years, male 384.4
265_1 87 years, male 382.8
517_1 88 years, male 382.4
295_1 61 years, female 382.0
42_1 85 years, male 377.2
189_1 76 years, male 376.4
351_1 91 years, male 374.6
218_1 71 years, female 371.1
347_1 72 years, male 369.7
137_1 83 years, male 368.2
264_1 73 years, female 364.7
354_1 81 years, female 350.9
356_1 87 years, female 348.3
163_1 78 years, male 347.2
379_1 60 years, male 340.9
99_1 64 years, male 338.7
246_1 77 years, male 333.2
389_1 86 years, female 329.6
349_1 83 years, male 327.4
355_1 70 years, female 312.9
394_1 75 years, female 281.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 183.0
FF:10030-101E3 24-65 years, mixed 183.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

544.2
Pig sample Sample description nTPM
Retina
nTPM: 544.3
Samples: 4

Max nTPM: 584.1
Min nTPM: 506.8
Sample A Female 527.1
Sample B Female 584.1
Sample C Male 559.1
Sample D Male 506.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1484.6
Mouse sample Sample description nTPM
Retina
nTPM: 1484.6
Samples: 4

Max nTPM: 1565.8
Min nTPM: 1350.6
Sample A Male 1565.8
Sample B Male 1520.5
Sample C Female 1350.6
Sample D Female 1501.4

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