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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
261.3
Sample id
Sample description
nTPM
Amygdala nTPM: 238.8
2514
Male, age 75, right hemisphere
323.5
2517
Female, age 94, left hemisphere
248.6
2695
Female, age 67, right hemisphere
239.9
1987
Female, age 91, left hemisphere
233.7
2814
Male, age 76, right hemisphere
148.3
Basal amygdala nTPM: 246.4
2609
Male, age 75, right hemisphere
388.8
2243
Female, age 91, right hemisphere
255.8
2827
Female, age 67, right hemisphere
248.0
2685
Female, age 94, left hemisphere
230.5
2110
Male, age 80, left hemisphere
189.0
1955
Male, age 76, both hemispheres
166.1
Central amygdala nTPM: 224.0
2826
Female, age 94, left hemisphere
295.2
2515
Male, age 75, right hemisphere
277.4
2239
Male, age 80, left hemisphere
230.2
2701
Female, age 91, right hemisphere
182.5
1905
Male, age 76, both hemispheres
134.9
Corticomedial amygdala nTPM: 234.3
2428
Male, age 75, right hemisphere
346.4
2242
Female, age 91, right hemisphere
243.8
2535
Female, age 67, right hemisphere
240.6
2829
Male, age 80, left hemisphere
221.0
2429
Female, age 94, left hemisphere
204.8
2240
Male, age 76, both hemispheres
149.1
Lateral amygdala nTPM: 261.3
2516
Male, age 75, right hemisphere
390.1
2256
Male, age 80, left hemisphere
276.3
2830
Female, age 67, right hemisphere
270.1
2534
Female, age 94, left hemisphere
250.4
2255
Female, age 91, right hemisphere
225.3
1883
Male, age 76, both hemispheres
155.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
193.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 193.8
Samples: 152
Max nTPM: 517.5
Min nTPM: 1.2
Std nTPM: 67.8
Median nTPM: 188.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
517.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
362.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
360.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
350.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
338.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
332.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
313.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
307.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
306.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
305.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
298.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
289.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
281.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
275.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
271.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
268.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
264.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
261.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
261.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
259.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
256.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
253.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
252.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
250.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
248.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
248.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
246.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
245.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
244.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
243.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
242.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
241.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
240.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
240.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
238.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
238.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
236.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
235.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
232.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
231.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
230.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
230.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
226.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
223.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
223.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
222.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
222.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
219.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
218.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
218.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
217.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
217.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
216.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
215.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
215.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
214.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
211.5
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
209.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
207.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
207.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
206.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
206.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
205.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
202.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
201.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
201.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
200.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
199.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
198.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
195.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
193.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
192.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
191.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
191.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
190.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
189.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
188.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
186.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
184.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
184.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
182.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
181.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
181.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
180.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
180.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
180.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
176.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
176.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
175.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
175.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
174.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
174.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
173.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
173.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
173.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
173.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
173.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
168.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
165.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
165.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
163.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
161.1
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
160.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
159.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
159.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
158.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
158.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
153.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
152.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
151.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
150.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
147.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
147.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
146.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
145.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
144.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
144.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
143.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
143.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
143.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
142.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
141.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
140.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
139.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
138.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
134.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
134.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
129.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
128.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
128.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
128.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
127.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
127.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
126.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
123.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
120.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
113.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
113.0
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
111.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
111.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
109.5
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
106.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
105.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
103.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
102.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
98.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
89.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
85.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
73.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
66.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
47.8
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
1.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
130.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 130.7
Samples: 4
Max nTPM: 149.7
Min nTPM: 113.6
Sample A
Male
113.6
Sample B
Male
130.5
Sample C
Female
149.7
Sample D
Female
129.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
