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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 143.1
1984
Male, age 76, both hemispheres
177.5
2090
Male, age 80, both hemispheres
136.2
2301
Female, age 85, both hemispheres
130.3
2188
Female, age 91, both hemispheres
128.6
Dorsal cochlear nucleus nTPM: 129.6
2378
Male, age 80, both hemispheres
165.4
2370
Male, age 61, both hemispheres
128.3
2058
Male, age 76, both hemispheres
125.8
2187
Female, age 91, both hemispheres
124.8
2802
Male, age 74, right hemisphere
103.8
Dorsal tegmental nucleus nTPM: 111.3
1936
Male, age 76, left hemisphere
139.1
2083
Male, age 80, both hemispheres
132.1
2326
Male, age 74, both hemispheres
112.9
2358
Male, age 61, both hemispheres
61.1
Dorsolateral tegmental area nTPM: 103.1
2654
Male, age 80, both hemispheres
128.2
2751
Female, age 85, both hemispheres
128.2
2141
Male, age 76, both hemispheres
100.2
2360
Male, age 74, both hemispheres
95.8
2337
Male, age 61, both hemispheres
63.1
Kolliker-Fuse nucleus nTPM: 129.2
2793
Female, age 91, left hemisphere
136.1
2315
Male, age 76, right hemisphere
126.9
2163
Male, age 80, both hemispheres
124.8
Lateral lemniscal nuclei nTPM: 135.4
2169
Male, age 76, both hemispheres
174.7
2320
Female, age 91, left hemisphere
144.0
2746
Female, age 85, left hemisphere
138.9
2036
Male, age 80, both hemispheres
110.7
2453
Male, age 74, right hemisphere
108.6
Lateral parabrachial nucleus nTPM: 121.9
2792
Male, age 76, both hemispheres
154.4
2139
Female, age 85, right hemisphere
142.6
2013
Male, age 80, both hemispheres
136.9
2790
Male, age 61, both hemispheres
53.6
Lateral vestibular nucleus nTPM: 151.6
2184
Male, age 76, both hemispheres
164.3
2311
Male, age 80, both hemispheres
138.8
Locus coeruleus nTPM: 120.6
2317
Female, age 72, unknown
142.8
2014
Male, age 55, unknown
125.8
2162
Male, age 80, both hemispheres
121.4
2720
Male, age 74, both hemispheres
120.2
1980
Male, age 76, both hemispheres
116.2
2123
Female, age 91, both hemispheres
112.4
2788
Male, age 74, unknown
105.3
Medial parabrachial nucleus nTPM: 123.3
2463
Female, age 85, right hemisphere
149.9
2786
Male, age 76, both hemispheres
138.2
2170
Female, age 91, both hemispheres
126.6
2854
Male, age 80, both hemispheres
106.6
2156
Male, age 61, both hemispheres
95.3
Medial periolivary nuclei nTPM: 139.6
2063
Male, age 76, both hemispheres
186.1
2171
Female, age 85, both hemispheres
153.8
2081
Male, age 80, both hemispheres
123.6
2458
Female, age 91, both hemispheres
117.3
2791
Male, age 74, right hemisphere
117.3
Motor facial nucleus nTPM: 140.9
2062
Male, age 76, both hemispheres
195.0
2795
Female, age 91, both hemispheres
155.1
2126
Male, age 61, both hemispheres
141.5
2327
Male, age 80, both hemispheres
124.4
2365
Male, age 74, right hemisphere
116.9
2697
Female, age 85, both hemispheres
112.6
Motor trigeminal nucleus nTPM: 125.7
2335
Male, age 61, both hemispheres
138.1
2309
Male, age 76, both hemispheres
135.8
2079
Male, age 80, both hemispheres
125.2
2321
Female, age 91, both hemispheres
117.0
2560
Male, age 74, both hemispheres
112.3
Nuclei of the trapezoid body nTPM: 152.7
1983
Male, age 76, both hemispheres
191.1
2159
Male, age 61, both hemispheres
165.8
2735
Female, age 85, both hemispheres
142.0
2166
Male, age 80, both hemispheres
134.5
2368
Female, age 91, both hemispheres
130.4
Nucleus raphe magnus nTPM: 141.0
2051
Male, age 76, both hemispheres
169.9
2160
Male, age 61, both hemispheres
149.6
2172
Female, age 85, both hemispheres
146.8
2455
Male, age 74, both hemispheres
133.5
2328
Male, age 80, both hemispheres
130.0
2459
Female, age 91, both hemispheres
116.3
Paramedian reticular nucleus nTPM: 115.1
2313
Male, age 61, both hemispheres
130.7
2050
Female, age 85, both hemispheres
119.2
2057
Male, age 80, both hemispheres
113.9
2052
Male, age 76, both hemispheres
96.7
Pedunculopontine tegmental nucleus nTPM: 111.2
1921
Female, age 85, both hemispheres
135.6
2334
Male, age 80, both hemispheres
118.7
2338
Male, age 61, both hemispheres
79.2
Pontine nuclei nTPM: 130.1
1968
Male, age 76, left hemisphere
197.6
2787
Female, age 85, both hemispheres
146.8
2115
Male, age 80, left hemisphere
135.4
2319
Female, age 91, both hemispheres
125.7
1863
Male, age 55, unknown
123.6
2109
Female, age 72, unknown
112.8
2727
Male, age 61, right hemisphere
108.5
2454
Male, age 74, left hemisphere
90.3
Pontine raphe nucleus nTPM: 124.7
2122
Female, age 85, midline
132.9
2853
Male, age 76, midline
116.5
Posteroventral cochlear nucleus nTPM: 140.5
2371
Male, age 61, both hemispheres
147.8
2070
Male, age 76, both hemispheres
144.2
2341
Male, age 80, both hemispheres
143.5
2752
Female, age 85, both hemispheres
140.3
2135
Female, age 91, both hemispheres
126.6
Principal sensory trigeminal nucleus nTPM: 137.7
2158
Male, age 61, both hemispheres
171.6
2324
Male, age 76, both hemispheres
151.4
2367
Female, age 91, left hemisphere
115.6
2008
Male, age 80, left hemisphere
112.0
Reticular pontine nucleus, caudal nTPM: 130.9
2092
Male, age 76, both hemispheres
166.9
2332
Male, age 80, right hemisphere
139.8
2457
Female, age 91, both hemispheres
123.2
2559
Male, age 74, both hemispheres
93.8
Reticular pontine nucleus, oral nTPM: 127.1
2167
Male, age 76, both hemispheres
145.8
2366
Female, age 91, both hemispheres
133.3
2012
Female, age 85, both hemispheres
124.7
1939
Male, age 80, both hemispheres
119.2
2361
Male, age 74, both hemispheres
112.6
Reticulotegmental nucleus nTPM: 138.9
2325
Male, age 76, both hemispheres
143.9
2333
Male, age 80, both hemispheres
142.0
2322
Female, age 91, both hemispheres
140.4
2452
Male, age 74, both hemispheres
129.3
Spinal trigeminal nucleus, oral nTPM: 131.8
1978
Male, age 76, both hemispheres
148.8
2737
Female, age 85, both hemispheres
125.1
2164
Male, age 80, both hemispheres
121.4
Subcoeruleus area nTPM: 132.2
2089
Male, age 76, left hemisphere
155.9
2451
Male, age 74, both hemispheres
147.6
2369
Female, age 85, left hemisphere
138.3
1958
Male, age 80, both hemispheres
112.5
2323
Female, age 91, left hemisphere
106.9
Superior olive nTPM: 123.9
2020
Male, age 76, both hemispheres
156.1
2561
Female, age 91, both hemispheres
137.0
2329
Male, age 80, right hemisphere
122.0
2364
Male, age 74, right hemisphere
105.6
1875
Female, age 85, both hemispheres
98.7
Ventral periolivary nuclei nTPM: 144.7
2165
Male, age 80, both hemispheres
152.8
2130
Female, age 85, both hemispheres
147.1
2794
Female, age 91, left hemisphere
145.5
2023
Male, age 76, both hemispheres
133.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 121.9
1959
Male, age 76, both hemispheres
152.3
2161
Male, age 80, both hemispheres
135.6
2456
Female, age 91, both hemispheres
128.6
2449
Male, age 74, both hemispheres
118.0
2840
Female, age 85, both hemispheres
110.3
2359
Male, age 61, both hemispheres
86.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.5
Pig sample
Sample description
nTPM
Pons nTPM: 93.5
Samples: 4
Max nTPM: 109.8
Min nTPM: 77.5
Sample A
Female
107.6
Sample B
Female
77.5
Sample C
Male
79.1
Sample D
Male
109.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
