PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		69.935
Mouse brain, Intensity
Ponsi 		64.633
RNA expressioni
HPA Brain:163.2 nTPM
FANTOM5:135.8 Scaled Tags Per Million
Pig:109.5 nTPM
Mouse:112.6 nTPM
Allen mouse:5.1 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody HPA007865
Medulla oblongata mean intensity 69.935
intensityi
FRONT BACK
Nucleus of the solitary tract 51.659
Raphe magnus nucleus 15.702
Cochlear nucleus 9.556
Lateral paragigantocellular nucleus 20.208
Raphe pallidus nucleus 26.991
Facial nucleus 14.513
Hypoglossal nucleus 39.168
Ambiguus nucleus 35.156
External cuneate nucleus 23.127
Inferior olivary nucleus 23.281
Raphe obscures nucleus 31.481
Dorsal motor nucleus of vagus 33.414
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 27.608
Parabrachial nucleus 64.633
Principle sensory trigeminal nucleus 20.630
Locus coeruleus 59.663
Pontine nucleus 46.447
Vestibular nucleus 16.619
Pontine reticular nucleus, oral 8.987
Lateral lemniscus 21.524
Superior paraolivary nucleus 11.923

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 163.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 143.1
1984 Male, age 76, both hemispheres 177.5
2090 Male, age 80, both hemispheres 136.2
2301 Female, age 85, both hemispheres 130.3
2188 Female, age 91, both hemispheres 128.6
Area postrema
nTPM: 101.5
2306 Male, age 80, both hemispheres 146.0
2054 Male, age 76, both hemispheres 102.1
2799 Male, age 61, both hemispheres 56.5
Dorsal cochlear nucleus
nTPM: 129.6
2378 Male, age 80, both hemispheres 165.4
2370 Male, age 61, both hemispheres 128.3
2058 Male, age 76, both hemispheres 125.8
2187 Female, age 91, both hemispheres 124.8
2802 Male, age 74, right hemisphere 103.8
Dorsal medullary reticular nucleus
nTPM: 130.5
2373 Male, age 61, both hemispheres 151.4
2088 Male, age 76, both hemispheres 133.9
2040 Female, age 85, both hemispheres 106.4
Dorsal motor vagal complex
nTPM: 121.7
2797 Male, age 61, both hemispheres 148.2
2844 Male, age 55, unknown 144.4
2000 Male, age 74, unknown 133.0
2813 Female, age 72, unknown 130.9
2185 Male, age 76, both hemispheres 123.8
2643 Male, age 74, both hemispheres 113.5
2133 Female, age 91, both hemispheres 94.6
2807 Female, age 85, both hemispheres 85.6
Dorsal tegmental nucleus
nTPM: 111.3
1936 Male, age 76, left hemisphere 139.1
2083 Male, age 80, both hemispheres 132.1
2326 Male, age 74, both hemispheres 112.9
2358 Male, age 61, both hemispheres 61.1
Dorsolateral tegmental area
nTPM: 103.1
2654 Male, age 80, both hemispheres 128.2
2751 Female, age 85, both hemispheres 128.2
2141 Male, age 76, both hemispheres 100.2
2360 Male, age 74, both hemispheres 95.8
2337 Male, age 61, both hemispheres 63.1
Gigantocellular reticular nuclei, medullary
nTPM: 139.9
2314 Male, age 61, both hemispheres 213.2
2462 Male, age 74, both hemispheres 151.2
2310 Male, age 80, both hemispheres 129.7
2387 Female, age 91, both hemispheres 118.9
2022 Male, age 76, right hemisphere 118.5
1876 Female, age 85, both hemispheres 107.8
Gigantocellular reticular nuclei, pars
nTPM: 147.0
2168 Male, age 76, both hemispheres 178.6
2336 Male, age 61, both hemispheres 145.5
2330 Male, age 80, both hemispheres 143.6
2706 Male, age 80, both hemispheres 137.3
2084 Female, age 85, both hemispheres 130.0
Inferior olive
nTPM: 163.2
2178 Male, age 61, both hemispheres 198.6
2085 Female, age 85, both hemispheres 168.5
2379 Male, age 80, both hemispheres 163.8
2563 Male, age 74, both hemispheres 152.2
2628 Female, age 91, both hemispheres 133.0
Kolliker-Fuse nucleus
nTPM: 129.2
2793 Female, age 91, left hemisphere 136.1
2315 Male, age 76, right hemisphere 126.9
2163 Male, age 80, both hemispheres 124.8
Lateral lemniscal nuclei
nTPM: 135.4
2169 Male, age 76, both hemispheres 174.7
2320 Female, age 91, left hemisphere 144.0
2746 Female, age 85, left hemisphere 138.9
2036 Male, age 80, both hemispheres 110.7
2453 Male, age 74, right hemisphere 108.6
Lateral medullary reticular nucleus
nTPM: 146.7
2852 Male, age 80, both hemispheres 181.1
2374 Male, age 61, both hemispheres 169.8
2044 Male, age 76, both hemispheres 168.7
2804 Female, age 91, both hemispheres 131.1
2190 Female, age 85, both hemispheres 123.2
2305 Male, age 74, both hemispheres 106.3
Lateral parabrachial nucleus
nTPM: 121.9
2792 Male, age 76, both hemispheres 154.4
2139 Female, age 85, right hemisphere 142.6
2013 Male, age 80, both hemispheres 136.9
2790 Male, age 61, both hemispheres 53.6
Lateral vestibular nucleus
nTPM: 151.6
2184 Male, age 76, both hemispheres 164.3
2311 Male, age 80, both hemispheres 138.8
Locus coeruleus
nTPM: 120.6
2317 Female, age 72, unknown 142.8
2014 Male, age 55, unknown 125.8
2162 Male, age 80, both hemispheres 121.4
2720 Male, age 74, both hemispheres 120.2
1980 Male, age 76, both hemispheres 116.2
2123 Female, age 91, both hemispheres 112.4
2788 Male, age 74, unknown 105.3
Medial olivary nucleus
nTPM: 128.9
2851 Male, age 80, both hemispheres 163.8
2138 Female, age 91, both hemispheres 125.8
1962 Male, age 76, both hemispheres 116.7
1943 Male, age 61, both hemispheres 109.1
Medial parabrachial nucleus
nTPM: 123.3
2463 Female, age 85, right hemisphere 149.9
2786 Male, age 76, both hemispheres 138.2
2170 Female, age 91, both hemispheres 126.6
2854 Male, age 80, both hemispheres 106.6
2156 Male, age 61, both hemispheres 95.3
Medial periolivary nuclei
nTPM: 139.6
2063 Male, age 76, both hemispheres 186.1
2171 Female, age 85, both hemispheres 153.8
2081 Male, age 80, both hemispheres 123.6
2458 Female, age 91, both hemispheres 117.3
2791 Male, age 74, right hemisphere 117.3
Medial vestibular nucleus
nTPM: 121.9
2624 Male, age 61, both hemispheres 148.7
2743 Female, age 85, both hemispheres 128.3
2134 Male, age 76, both hemispheres 122.4
2093 Male, age 80, both hemispheres 118.2
2801 Male, age 74, both hemispheres 109.4
2803 Female, age 91, both hemispheres 104.6
Motor facial nucleus
nTPM: 140.9
2062 Male, age 76, both hemispheres 195.0
2795 Female, age 91, both hemispheres 155.1
2126 Male, age 61, both hemispheres 141.5
2327 Male, age 80, both hemispheres 124.4
2365 Male, age 74, right hemisphere 116.9
2697 Female, age 85, both hemispheres 112.6
Motor hypoglossal nucleus
nTPM: 113.8
2182 Male, age 80, both hemispheres 125.3
2125 Female, age 91, both hemispheres 121.4
2461 Male, age 61, both hemispheres 113.8
2277 Male, age 76, both hemispheres 108.9
2132 Female, age 85, both hemispheres 99.3
Motor trigeminal nucleus
nTPM: 125.7
2335 Male, age 61, both hemispheres 138.1
2309 Male, age 76, both hemispheres 135.8
2079 Male, age 80, both hemispheres 125.2
2321 Female, age 91, both hemispheres 117.0
2560 Male, age 74, both hemispheres 112.3
Nuclei of the trapezoid body
nTPM: 152.7
1983 Male, age 76, both hemispheres 191.1
2159 Male, age 61, both hemispheres 165.8
2735 Female, age 85, both hemispheres 142.0
2166 Male, age 80, both hemispheres 134.5
2368 Female, age 91, both hemispheres 130.4
Nucleus ambiguus
nTPM: 152.7
2071 Male, age 76, both hemispheres 156.1
2096 Female, age 85, both hemispheres 149.4
Nucleus cuneatus
nTPM: 132.5
2131 Male, age 76, both hemispheres 192.5
2100 Male, age 76, both hemispheres 156.6
2376 Male, age 61, both hemispheres 140.7
2380 Male, age 80, both hemispheres 131.1
2562 Male, age 61, both hemispheres 118.9
2805 Female, age 91, both hemispheres 117.1
2564 Male, age 74, both hemispheres 116.3
2381 Male, age 80, both hemispheres 112.6
2808 Female, age 85, both hemispheres 106.9
Nucleus gracilis
nTPM: 113.5
2382 Male, age 80, both hemispheres 120.4
2627 Male, age 74, both hemispheres 111.5
2299 Female, age 85, both hemispheres 108.7
Nucleus raphe magnus
nTPM: 141.0
2051 Male, age 76, both hemispheres 169.9
2160 Male, age 61, both hemispheres 149.6
2172 Female, age 85, both hemispheres 146.8
2455 Male, age 74, both hemispheres 133.5
2328 Male, age 80, both hemispheres 130.0
2459 Female, age 91, both hemispheres 116.3
Nucleus raphe obscurus
nTPM: 130.0
2800 Male, age 61, midline 142.4
2142 Male, age 76, midline 132.9
2845 Female, age 85, midline 114.9
Nucleus raphe pallidus
nTPM: 96.8
2145 Male, age 76, midline 127.5
2183 Male, age 80, midline 119.2
1924 Male, age 61, midline 43.8
Nucleus tractus solitarii
nTPM: 91.2
2656 Male, age 76, both hemispheres 103.4
2191 Female, age 85, both hemispheres 90.2
2307 Male, age 80, both hemispheres 87.6
2144 Female, age 91, right hemisphere 83.5
Paramedian reticular nucleus
nTPM: 115.1
2313 Male, age 61, both hemispheres 130.7
2050 Female, age 85, both hemispheres 119.2
2057 Male, age 80, both hemispheres 113.9
2052 Male, age 76, both hemispheres 96.7
Parvicellular reticular nuclei
nTPM: 131.5
2095 Male, age 76, both hemispheres 153.3
2119 Male, age 80, both hemispheres 124.0
2558 Male, age 74, both hemispheres 117.1
Parvicellular reticular nuclei, medullary
nTPM: 117.3
2181 Male, age 80, left hemisphere 125.6
2091 Female, age 85, both hemispheres 113.5
2189 Female, age 91, both hemispheres 112.7
Pedunculopontine tegmental nucleus
nTPM: 111.2
1921 Female, age 85, both hemispheres 135.6
2334 Male, age 80, both hemispheres 118.7
2338 Male, age 61, both hemispheres 79.2
Peritrigeminal nucleus
nTPM: 157.4
2136 Male, age 76, both hemispheres 184.3
2067 Female, age 85, both hemispheres 158.8
2179 Male, age 61, both hemispheres 129.2
Pontine nuclei
nTPM: 130.1
1968 Male, age 76, left hemisphere 197.6
2787 Female, age 85, both hemispheres 146.8
2115 Male, age 80, left hemisphere 135.4
2319 Female, age 91, both hemispheres 125.7
1863 Male, age 55, unknown 123.6
2109 Female, age 72, unknown 112.8
2727 Male, age 61, right hemisphere 108.5
2454 Male, age 74, left hemisphere 90.3
Pontine raphe nucleus
nTPM: 124.7
2122 Female, age 85, midline 132.9
2853 Male, age 76, midline 116.5
Posteroventral cochlear nucleus
nTPM: 140.5
2371 Male, age 61, both hemispheres 147.8
2070 Male, age 76, both hemispheres 144.2
2341 Male, age 80, both hemispheres 143.5
2752 Female, age 85, both hemispheres 140.3
2135 Female, age 91, both hemispheres 126.6
Prepositus hypoglossal nucleus
nTPM: 133.6
2086 Male, age 80, both hemispheres 158.2
2855 Female, age 85, right hemisphere 109.1
Principal sensory trigeminal nucleus
nTPM: 137.7
2158 Male, age 61, both hemispheres 171.6
2324 Male, age 76, both hemispheres 151.4
2367 Female, age 91, left hemisphere 115.6
2008 Male, age 80, left hemisphere 112.0
Reticular pontine nucleus, caudal
nTPM: 130.9
2092 Male, age 76, both hemispheres 166.9
2332 Male, age 80, right hemisphere 139.8
2457 Female, age 91, both hemispheres 123.2
2559 Male, age 74, both hemispheres 93.8
Reticular pontine nucleus, oral
nTPM: 127.1
2167 Male, age 76, both hemispheres 145.8
2366 Female, age 91, both hemispheres 133.3
2012 Female, age 85, both hemispheres 124.7
1939 Male, age 80, both hemispheres 119.2
2361 Male, age 74, both hemispheres 112.6
Reticulotegmental nucleus
nTPM: 138.9
2325 Male, age 76, both hemispheres 143.9
2333 Male, age 80, both hemispheres 142.0
2322 Female, age 91, both hemispheres 140.4
2452 Male, age 74, both hemispheres 129.3
Spinal trigeminal nucleus, caudal
nTPM: 130.6
2447 Male, age 76, both hemispheres 165.6
2312 Male, age 61, both hemispheres 143.8
2308 Male, age 80, both hemispheres 135.2
2390 Female, age 91, both hemispheres 106.4
2642 Male, age 74, both hemispheres 102.2
Spinal trigeminal nucleus, interpolar
nTPM: 139.6
2066 Male, age 76, right hemisphere 222.9
2625 Male, age 61, both hemispheres 162.6
2389 Female, age 91, both hemispheres 116.2
2033 Male, age 80, both hemispheres 101.9
2386 Female, age 85, both hemispheres 94.3
Spinal trigeminal nucleus, oral
nTPM: 131.8
1978 Male, age 76, both hemispheres 148.8
2737 Female, age 85, both hemispheres 125.1
2164 Male, age 80, both hemispheres 121.4
Spinal vestibular nucleus
nTPM: 115.3
2748 Male, age 76, both hemispheres 134.5
2796 Male, age 61, both hemispheres 126.0
2780 Male, age 80, both hemispheres 116.6
2806 Female, age 85, both hemispheres 112.0
2384 Male, age 74, both hemispheres 105.7
2186 Female, age 91, both hemispheres 96.8
Subcoeruleus area
nTPM: 132.2
2089 Male, age 76, left hemisphere 155.9
2451 Male, age 74, both hemispheres 147.6
2369 Female, age 85, left hemisphere 138.3
1958 Male, age 80, both hemispheres 112.5
2323 Female, age 91, left hemisphere 106.9
Superior olive
nTPM: 123.9
2020 Male, age 76, both hemispheres 156.1
2561 Female, age 91, both hemispheres 137.0
2329 Male, age 80, right hemisphere 122.0
2364 Male, age 74, right hemisphere 105.6
1875 Female, age 85, both hemispheres 98.7
Superior vestibular nucleus
nTPM: 118.1
2061 Male, age 76, both hemispheres 133.5
2015 Male, age 80, both hemispheres 121.5
2383 Male, age 74, both hemispheres 99.2
Ventral medullary reticular nucleus
nTPM: 144.2
2372 Male, age 61, both hemispheres 164.5
2060 Male, age 76, both hemispheres 123.9
Ventral periolivary nuclei
nTPM: 144.7
2165 Male, age 80, both hemispheres 152.8
2130 Female, age 85, both hemispheres 147.1
2794 Female, age 91, left hemisphere 145.5
2023 Male, age 76, both hemispheres 133.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 154.1
1986 Male, age 76, both hemispheres 177.5
2180 Male, age 61, both hemispheres 159.2
2741 Female, age 85, both hemispheres 150.1
2118 Male, age 80, both hemispheres 147.6
2302 Female, age 91, both hemispheres 136.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 121.9
1959 Male, age 76, both hemispheres 152.3
2161 Male, age 80, both hemispheres 135.6
2456 Female, age 91, both hemispheres 128.6
2449 Male, age 74, both hemispheres 118.0
2840 Female, age 85, both hemispheres 110.3
2359 Male, age 61, both hemispheres 86.9

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 135.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 135.8
FF:10182-103D2 60 years, female 146.6
FF:10165-103B3 76 years, female 124.9
Medulla oblongata
Scaled Tags Per Million: 110.8
FF:10038-101F2 18-64 years, mixed 166.5
FF:10155-103A2 76 years, female 97.1
FF:10174-103C3 60 years, female 68.9
Pons
Scaled Tags Per Million: 128.6
FF:10033-101E6 18-54 years, mixed 128.6

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 109.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 109.5
Samples: 4

Max nTPM: 126.5
Min nTPM: 92.4
Sample A Female 101.5
Sample B Female 92.4
Sample C Male 117.4
Sample D Male 126.5
Pons
nTPM: 93.5
Samples: 4

Max nTPM: 109.8
Min nTPM: 77.5
Sample A Female 107.6
Sample B Female 77.5
Sample C Male 79.1
Sample D Male 109.8

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 112.6
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 112.6
Samples: 4

Max nTPM: 118.3
Min nTPM: 106.8
Sample A Male 114.0
Sample B Male 106.8
Sample C Female 118.3
Sample D Female 111.2

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.1
155 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 7.8
154 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 4.6
156 Sense, RPS_Baylor_36956, Mouse strain C57BL/6J (56 days, male) 0.4
Pons
Expression energy: 5.1
155 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 9.2
154 Antisense, RP_Baylor_102646, Mouse strain C57BL/6J (56 days, male) 5.6
156 Sense, RPS_Baylor_36956, Mouse strain C57BL/6J (56 days, male) 1.0

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