MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:206.2 nTPM
HPA Brain:290.4 nTPM
GTEx:206.2 nTPM
FANTOM5:447.9 Scaled Tags Per Million
Pig:176.5 nTPM
Mouse:2.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 290.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.2
1830 Male, age 51, unknown 277.6
2411 Female, age 72, unknown 257.1
2019 Male, age 18, unknown 251.7
1870 Female, age 42, unknown 239.4
1833 Male, age 53, unknown 233.4
2828 Female, age 72, unknown 184.7
2586 Male, age 75, left hemisphere 143.3
2666 Male, age 74, left hemisphere 135.7
1827 Male, age 72, unknown 116.4
2219 Male, age 76, both hemispheres 113.1
Dorsal raphe nucleus
nTPM: 145.2
2750 Male, age 76, both hemispheres 292.9
1828 Male, age 53, unknown 145.5
2016 Female, age 72, unknown 126.4
2047 Male, age 72, unknown 93.7
2298 Female, age 72, unknown 67.4
Inferior colliculus
nTPM: 119.2
1890 Male, age 53, unknown 149.6
1848 Female, age 42, unknown 124.9
2849 Male, age 72, unknown 111.6
2097 Female, age 72, unknown 90.7
Median raphe nucleus
nTPM: 139.3
2220 Male, age 76, midline 139.3
Periaquaductal grey, anterior
nTPM: 77.8
1947 Male, age 18, unknown 95.8
1795 Male, age 51, unknown 73.8
2502 Female, age 75, unknown 63.7
Periaquaductal grey, dorsal
nTPM: 72.4
2464 Female, age 72, unknown 125.9
1831 Male, age 72, unknown 87.6
2850 Male, age 76, both hemispheres 38.5
1840 Male, age 53, unknown 37.7
Periaquaductal grey, lateral
nTPM: 85.7
2272 Male, age 74, both hemispheres 128.7
2053 Male, age 18, unknown 91.5
2140 Male, age 76, both hemispheres 37.0
Pretectal area
nTPM: 101.4
2407 Male, age 75, both hemispheres 159.7
2316 Male, age 76, right hemisphere 152.1
1815 Male, age 53, unknown 123.2
2007 Male, age 72, unknown 117.9
2825 Male, age 18, unknown 112.4
2273 Male, age 74, both hemispheres 109.3
1817 Female, age 42, unknown 105.8
2224 Female, age 72, unknown 72.5
2667 Female, age 75, unknown 59.2
1944 Female, age 72, unknown 58.4
1816 Male, age 51, unknown 45.0
Red nucleus
nTPM: 290.4
1821 Female, age 72, unknown 353.0
1865 Male, age 51, unknown 347.9
2769 Male, age 72, unknown 340.0
2227 Male, age 72, unknown 337.0
2823 Male, age 76, right hemisphere 335.4
1904 Male, age 53, unknown 289.3
2785 Male, age 18, unknown 287.3
2503 Female, age 72, unknown 253.5
1954 Female, age 42, unknown 240.7
2584 Male, age 75, left hemisphere 236.4
2725 Female, age 75, unknown 235.8
2588 Male, age 74, left hemisphere 228.7
Substantia nigra
nTPM: 131.4
2583 Male, age 75, right hemisphere 187.7
2590 Female, age 75, unknown 183.6
1889 Female, age 72, unknown 159.2
1851 Male, age 51, unknown 150.9
2409 Female, age 72, unknown 143.4
1941 Male, age 53, unknown 115.0
1916 Female, age 42, unknown 106.8
2699 Male, age 18, unknown 106.6
2241 Male, age 72, unknown 95.1
2665 Male, age 74, both hemispheres 65.8
Superior colliculus
nTPM: 136.4
2668 Female, age 75, unknown 200.0
1913 Female, age 42, unknown 188.5
1895 Male, age 76, right hemisphere 186.7
2587 Male, age 74, left hemisphere 164.2
1995 Male, age 72, unknown 157.5
1839 Male, age 51, unknown 148.9
1796 Male, age 53, unknown 103.5
2664 Male, age 75, both hemispheres 79.0
2087 Female, age 72, unknown 74.9
2261 Male, age 18, unknown 60.6
Ventral tegmental area
nTPM: 191.3
2223 Female, age 72, unknown 399.1
2410 Female, age 72, unknown 185.7
2021 Male, age 53, unknown 160.6
1942 Male, age 51, unknown 145.8
2218 Male, age 76, both hemispheres 144.4
1915 Female, age 42, unknown 112.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 206.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 206.2
Samples: 139

Max nTPM: 968.2
Min nTPM: 40.3
Std nTPM: 141.8
Median nTPM: 156.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 968.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 768.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 653.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 580.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 526.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 523.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 493.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 480.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 453.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 432.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 432.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 447.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 447.9
FF:10158-103A5 76 years, female 447.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 176.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 144.9
Samples: 4

Max nTPM: 228.3
Min nTPM: 96.0
Sample A Female 136.7
Sample B Female 96.0
Sample C Male 118.6
Sample D Male 228.3
Midbrain
nTPM: 176.5
Samples: 4

Max nTPM: 387.1
Min nTPM: 76.6
Sample A Female 387.1
Sample B Female 163.6
Sample C Male 76.6
Sample D Male 78.6
Periaqueductal gray
nTPM: 97.3
Samples: 3

Max nTPM: 132.0
Min nTPM: 69.8
Sample B Female 132.0
Sample C Male 69.8
Sample D Male 90.2
Superior colliculi
nTPM: 114.4
Samples: 4

Max nTPM: 139.9
Min nTPM: 67.2
Sample A Female 119.3
Sample B Female 67.2
Sample C Male 131.0
Sample D Male 139.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.8
Sample A Male 3.4
Sample B Male 3.2
Sample C Female 1.8
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71529905 Antisense, RP_050915_01_C04, Mouse strain C57BL/6J (56 days, male) 0.1

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