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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:617.5 nTPM
HPA Brain:279.3 nTPM
GTEx:617.5 nTPM
FANTOM5:439.3 Scaled Tags Per Million
Pig:288.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 232.7
2816 Male, age 47, midline 295.4
1981 Female, age 72, midline 270.6
2194 Female, age 79, both hemispheres 235.1
2048 Male, age 55, midline 201.4
2565 Male, age 75, midline 161.2
Cervical spinal cord, dorsal horn
nTPM: 256.6
2296 Male, age 66, both hemispheres 565.5
2173 Female, age 72, unknown 352.6
2069 Male, age 47, both hemispheres 213.0
1877 Male, age 55, unknown 202.9
2721 Male, age 90, both hemispheres 122.7
2297 Male, age 75, both hemispheres 82.6
Cervical spinal cord, ventral horn
nTPM: 279.3
2068 Male, age 55, unknown 334.3
2098 Female, age 72, unknown 321.6
2820 Female, age 79, both hemispheres 308.1
2480 Male, age 75, both hemispheres 277.5
2809 Male, age 90, both hemispheres 239.0
2295 Male, age 66, both hemispheres 195.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

617.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 617.5
Samples: 159

Max nTPM: 1937.5
Min nTPM: 106.8
Std nTPM: 277.8
Median nTPM: 589.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1937.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1384.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1301.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1284.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1209.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1204.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1197.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1122.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1119.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1056.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1052.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1050.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1032.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1009.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 978.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 969.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 962.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 955.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 936.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 924.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 918.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 915.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 909.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 892.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 887.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 861.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 860.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 847.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 846.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 845.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 831.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 821.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 817.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 810.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 797.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 796.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 788.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 781.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 775.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 771.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 765.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 763.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 761.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 755.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 753.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 753.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 732.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 723.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 719.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 714.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 710.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 704.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 702.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 701.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 699.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 692.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 683.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 677.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 671.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 665.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 661.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 655.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 654.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 648.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 647.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 646.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 632.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 615.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 609.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 608.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 607.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 605.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 604.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 604.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 596.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 594.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 593.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 591.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 591.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 589.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 589.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 584.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 584.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 579.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 575.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 573.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 572.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 569.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 559.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 550.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 546.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 534.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 530.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 528.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 527.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 525.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 524.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 522.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 505.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 497.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 482.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 479.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 477.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 468.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 467.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 467.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 463.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 463.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 461.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 459.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 458.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 457.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 451.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 447.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 445.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 444.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 440.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 437.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 419.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 411.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 408.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 400.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 387.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 387.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 377.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 376.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 374.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 364.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 363.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 360.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 358.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 357.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 356.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 352.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 350.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 348.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 345.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 342.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 338.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 334.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 329.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 324.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 316.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 306.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 300.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 285.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 270.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 266.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 262.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 255.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 244.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 237.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 235.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 225.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 224.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 168.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 168.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 109.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 106.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

439.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 439.3
FF:10181-103D1 60 years, female 674.8
FF:10159-103A6 76 years, female 203.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 232.5
Samples: 4

Max nTPM: 259.6
Min nTPM: 189.4
Sample A Female 233.3
Sample B Female 259.6
Sample C Male 189.4
Sample D Male 247.5
Ventral spinal cord
nTPM: 288.8
Samples: 4

Max nTPM: 332.0
Min nTPM: 251.8
Sample A Female 271.6
Sample B Female 299.8
Sample C Male 251.8
Sample D Male 332.0

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