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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:143.5 nTPM
HPA Brain:300.9 nTPM
GTEx:143.5 nTPM
FANTOM5:106.5 Scaled Tags Per Million
Pig:83.4 nTPM
Mouse:92.6 nTPM
Allen mouse:18.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.9
Sample id Sample description nTPM
Amygdala
nTPM: 242.4
2695 Female, age 67, right hemisphere 291.1
2517 Female, age 94, left hemisphere 248.8
2814 Male, age 76, right hemisphere 243.4
2514 Male, age 75, right hemisphere 220.6
1987 Female, age 91, left hemisphere 208.2
Basal amygdala
nTPM: 300.9
2243 Female, age 91, right hemisphere 318.7
2685 Female, age 94, left hemisphere 316.1
2827 Female, age 67, right hemisphere 312.1
2110 Male, age 80, left hemisphere 304.8
2609 Male, age 75, right hemisphere 295.7
1955 Male, age 76, both hemispheres 257.8
Central amygdala
nTPM: 285.3
2826 Female, age 94, left hemisphere 342.2
2239 Male, age 80, left hemisphere 281.5
2701 Female, age 91, right hemisphere 276.1
2515 Male, age 75, right hemisphere 267.3
1905 Male, age 76, both hemispheres 259.5
Corticomedial amygdala
nTPM: 283.1
2829 Male, age 80, left hemisphere 313.5
2242 Female, age 91, right hemisphere 291.2
2535 Female, age 67, right hemisphere 286.1
2428 Male, age 75, right hemisphere 270.8
2429 Female, age 94, left hemisphere 269.7
2240 Male, age 76, both hemispheres 267.0
Lateral amygdala
nTPM: 292.1
2830 Female, age 67, right hemisphere 350.4
2516 Male, age 75, right hemisphere 321.3
2534 Female, age 94, left hemisphere 297.8
2255 Female, age 91, right hemisphere 274.9
2256 Male, age 80, left hemisphere 269.3
1883 Male, age 76, both hemispheres 238.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 143.5
Samples: 152

Max nTPM: 232.4
Min nTPM: 89.8
Std nTPM: 31.6
Median nTPM: 139.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 232.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 223.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 220.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 219.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 218.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 209.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 208.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 206.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 205.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 198.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 196.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 196.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 196.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 193.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 191.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 190.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 190.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 190.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 180.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 175.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 174.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 173.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 173.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 173.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 172.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 172.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 170.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 170.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 170.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 169.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 169.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 167.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 166.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 165.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 164.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 164.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 163.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 161.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 161.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 160.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 160.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 160.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 158.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 156.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 156.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 153.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 153.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 152.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 152.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 151.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 151.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 150.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 150.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 149.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 148.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 148.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 148.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 148.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 147.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 147.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 146.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 145.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 144.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 142.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 142.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 141.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 141.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 141.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 140.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 139.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 139.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 138.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 138.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 137.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 137.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 136.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 136.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 133.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 133.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 132.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 132.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 132.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 131.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 131.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 129.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 128.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 127.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 125.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 125.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 124.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 124.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 124.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 124.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 123.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 123.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 122.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 121.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 121.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 120.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 120.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 119.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 119.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 118.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 118.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 118.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 118.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 117.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 117.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 115.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 115.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 112.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 112.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 110.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 109.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 108.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 108.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 106.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 105.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 102.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 101.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 98.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 92.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 92.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 89.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

106.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 106.5
FF:10151-102I7 76 years, female 106.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.4
Pig sample Sample description nTPM
Amygdala
nTPM: 83.4
Samples: 4

Max nTPM: 102.1
Min nTPM: 60.1
Sample A Female 102.1
Sample B Female 60.1
Sample C Male 90.8
Sample D Male 80.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 92.6
Samples: 4

Max nTPM: 104.7
Min nTPM: 86.8
Sample A Male 86.8
Sample B Male 87.0
Sample C Female 104.7
Sample D Female 91.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.6
68844235 Antisense, RP_050222_01_B09, Mouse strain C57BL/6J (56 days, male) 18.6

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