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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125.4 nTPM
HPA Brain:261.8 nTPM
GTEx:125.4 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:47.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 226.3
2565 Male, age 75, midline 279.1
2816 Male, age 47, midline 231.8
2194 Female, age 79, both hemispheres 212.7
2048 Male, age 55, midline 208.4
1981 Female, age 72, midline 199.5
Cervical spinal cord, dorsal horn
nTPM: 209.5
2721 Male, age 90, both hemispheres 233.6
1877 Male, age 55, unknown 227.5
2296 Male, age 66, both hemispheres 214.3
2297 Male, age 75, both hemispheres 210.7
2173 Female, age 72, unknown 189.3
2069 Male, age 47, both hemispheres 181.7
Cervical spinal cord, ventral horn
nTPM: 261.8
2480 Male, age 75, both hemispheres 347.6
2295 Male, age 66, both hemispheres 275.6
2820 Female, age 79, both hemispheres 264.7
2809 Male, age 90, both hemispheres 255.2
2068 Male, age 55, unknown 227.6
2098 Female, age 72, unknown 199.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 125.4
Samples: 159

Max nTPM: 183.5
Min nTPM: 75.1
Std nTPM: 23.6
Median nTPM: 123.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 183.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 181.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 181.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 179.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 178.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 176.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 173.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 171.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 171.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 170.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 170.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 167.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 163.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 163.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 162.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 161.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 161.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 159.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 158.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 157.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 156.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 153.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 152.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 149.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 148.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 146.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 146.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 145.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 145.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 145.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 145.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 144.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 142.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 142.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 141.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 141.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 141.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 140.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 140.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 139.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 138.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 136.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 135.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 135.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 135.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 134.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 134.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 133.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 133.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 133.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 133.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 133.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 132.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 132.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 132.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 132.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 130.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 130.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 130.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 130.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 130.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 129.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 129.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 129.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 129.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 128.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 127.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 127.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 127.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 127.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 126.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 125.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 125.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 125.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 124.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 123.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 122.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 122.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 121.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 121.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 120.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 120.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 120.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 119.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 118.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 118.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 117.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 117.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 117.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 116.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 116.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 116.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 116.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 116.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 115.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 115.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 114.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 114.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 114.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 114.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 113.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 113.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 113.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 113.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 113.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 112.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 111.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 110.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 110.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 110.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 109.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 109.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 108.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 108.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 108.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 107.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 107.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 107.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 107.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 107.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 105.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 105.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 105.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 104.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 103.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 103.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 101.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 101.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 100.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 98.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 98.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 97.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 96.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 95.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 93.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 92.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 91.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 91.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 90.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 87.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 86.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 86.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 86.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 83.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 83.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 82.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 92.2
FF:10181-103D1 60 years, female 100.3
FF:10159-103A6 76 years, female 84.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 47.9
Samples: 4

Max nTPM: 51.7
Min nTPM: 42.5
Sample A Female 46.1
Sample B Female 42.5
Sample C Male 51.7
Sample D Male 51.3
Ventral spinal cord
nTPM: 44.4
Samples: 4

Max nTPM: 51.8
Min nTPM: 39.1
Sample A Female 42.5
Sample B Female 44.1
Sample C Male 51.8
Sample D Male 39.1

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