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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:110.1 nTPM
HPA Brain:110.4 nTPM
GTEx:110.1 nTPM
FANTOM5:101.3 Scaled Tags Per Million
Pig:42.5 nTPM
Mouse:43.3 nTPM
Allen mouse:3.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.4
Sample id Sample description nTPM
Amygdala
nTPM: 110.4
2814 Male, age 76, right hemisphere 125.8
2695 Female, age 67, right hemisphere 120.4
2514 Male, age 75, right hemisphere 108.6
1987 Female, age 91, left hemisphere 102.7
2517 Female, age 94, left hemisphere 94.6
Basal amygdala
nTPM: 90.8
2609 Male, age 75, right hemisphere 105.9
1955 Male, age 76, both hemispheres 92.0
2110 Male, age 80, left hemisphere 91.8
2685 Female, age 94, left hemisphere 87.4
2827 Female, age 67, right hemisphere 86.5
2243 Female, age 91, right hemisphere 81.3
Central amygdala
nTPM: 105.5
1905 Male, age 76, both hemispheres 125.5
2826 Female, age 94, left hemisphere 110.0
2515 Male, age 75, right hemisphere 105.7
2701 Female, age 91, right hemisphere 97.6
2239 Male, age 80, left hemisphere 88.7
Corticomedial amygdala
nTPM: 86.4
2428 Male, age 75, right hemisphere 110.1
2240 Male, age 76, both hemispheres 92.3
2429 Female, age 94, left hemisphere 85.0
2829 Male, age 80, left hemisphere 79.9
2242 Female, age 91, right hemisphere 77.1
2535 Female, age 67, right hemisphere 74.0
Lateral amygdala
nTPM: 104.0
2516 Male, age 75, right hemisphere 119.8
1883 Male, age 76, both hemispheres 109.1
2830 Female, age 67, right hemisphere 109.1
2256 Male, age 80, left hemisphere 97.5
2534 Female, age 94, left hemisphere 95.1
2255 Female, age 91, right hemisphere 93.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 110.1
Samples: 152

Max nTPM: 199.2
Min nTPM: 66.3
Std nTPM: 24.2
Median nTPM: 106.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 199.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 183.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 177.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 174.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 167.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 164.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 157.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 156.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 154.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 149.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 149.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 147.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 145.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 144.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 142.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 141.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 140.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 139.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 135.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 135.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 134.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 134.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 134.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 133.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 132.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 130.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 129.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 129.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 129.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 128.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 127.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 127.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 125.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 125.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 124.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 124.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 123.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 122.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 121.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 121.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 121.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 120.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 119.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 119.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 118.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 116.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 116.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 116.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 115.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 114.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 114.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 113.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 113.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 112.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 112.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 112.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 112.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 110.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 110.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 109.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 109.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 108.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 108.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 107.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 107.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 107.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 106.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 106.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 106.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 105.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 104.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 103.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 103.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 103.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 103.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 102.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 101.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 101.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 100.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 100.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 100.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 98.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 97.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 97.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 96.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 96.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 95.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 95.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 95.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 94.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 94.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 94.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 93.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 93.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 93.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 93.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 93.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 92.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 92.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 91.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 91.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 91.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 90.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 90.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 90.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 89.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 88.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 88.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 88.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 88.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 87.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 87.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 86.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 85.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 84.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 83.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 81.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 80.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 80.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 78.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 78.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 75.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 75.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 72.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 71.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 68.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 66.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 101.3
FF:10151-102I7 76 years, female 101.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.5
Pig sample Sample description nTPM
Amygdala
nTPM: 42.5
Samples: 4

Max nTPM: 48.5
Min nTPM: 38.4
Sample A Female 48.5
Sample B Female 38.4
Sample C Male 44.2
Sample D Male 39.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 43.3
Samples: 4

Max nTPM: 46.2
Min nTPM: 40.5
Sample A Male 46.2
Sample B Male 42.5
Sample C Female 44.1
Sample D Female 40.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.1
68442967 Antisense, RP_050111_01_B04, Mouse strain C57BL/6J (56 days, male) 6.1
70918772 Antisense, RP_050712_04_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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