MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.6 nTPM
HPA Brain:134.6 nTPM
GTEx:136.6 nTPM
FANTOM5:178.2 Scaled Tags Per Million
Pig:71.9 nTPM
Mouse:43.6 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 134.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.2
2019 Male, age 18, unknown 142.0
2411 Female, age 72, unknown 136.7
2666 Male, age 74, left hemisphere 132.4
1870 Female, age 42, unknown 126.6
1833 Male, age 53, unknown 124.9
1830 Male, age 51, unknown 123.4
2828 Female, age 72, unknown 120.5
1827 Male, age 72, unknown 112.6
2586 Male, age 75, left hemisphere 112.0
2219 Male, age 76, both hemispheres 81.0
Dorsal raphe nucleus
nTPM: 117.5
2750 Male, age 76, both hemispheres 135.8
2298 Female, age 72, unknown 118.6
2016 Female, age 72, unknown 116.0
1828 Male, age 53, unknown 110.4
2047 Male, age 72, unknown 106.9
Inferior colliculus
nTPM: 97.7
2097 Female, age 72, unknown 103.1
1890 Male, age 53, unknown 97.7
1848 Female, age 42, unknown 96.6
2849 Male, age 72, unknown 93.3
Median raphe nucleus
nTPM: 109.7
2220 Male, age 76, midline 109.7
Periaquaductal grey, anterior
nTPM: 108.2
2502 Female, age 75, unknown 118.4
1947 Male, age 18, unknown 104.7
1795 Male, age 51, unknown 101.5
Periaquaductal grey, dorsal
nTPM: 104.4
2850 Male, age 76, both hemispheres 112.8
2464 Female, age 72, unknown 110.7
1840 Male, age 53, unknown 97.2
1831 Male, age 72, unknown 96.7
Periaquaductal grey, lateral
nTPM: 111.6
2140 Male, age 76, both hemispheres 116.1
2272 Male, age 74, both hemispheres 112.3
2053 Male, age 18, unknown 106.4
Pretectal area
nTPM: 117.7
1817 Female, age 42, unknown 135.5
1815 Male, age 53, unknown 132.6
2007 Male, age 72, unknown 131.6
1944 Female, age 72, unknown 123.7
1816 Male, age 51, unknown 120.5
2316 Male, age 76, right hemisphere 112.5
2825 Male, age 18, unknown 112.1
2273 Male, age 74, both hemispheres 111.5
2667 Female, age 75, unknown 109.1
2407 Male, age 75, both hemispheres 108.5
2224 Female, age 72, unknown 97.0
Red nucleus
nTPM: 134.6
1904 Male, age 53, unknown 146.2
2785 Male, age 18, unknown 144.5
1865 Male, age 51, unknown 141.6
2503 Female, age 72, unknown 141.3
1821 Female, age 72, unknown 139.3
2227 Male, age 72, unknown 137.5
2823 Male, age 76, right hemisphere 137.4
2769 Male, age 72, unknown 131.5
1954 Female, age 42, unknown 129.5
2588 Male, age 74, left hemisphere 128.4
2725 Female, age 75, unknown 125.1
2584 Male, age 75, left hemisphere 113.4
Substantia nigra
nTPM: 115.1
2590 Female, age 75, unknown 127.1
1889 Female, age 72, unknown 126.9
2409 Female, age 72, unknown 121.0
2665 Male, age 74, both hemispheres 120.8
1851 Male, age 51, unknown 119.0
2583 Male, age 75, right hemisphere 114.8
2241 Male, age 72, unknown 109.6
1941 Male, age 53, unknown 106.6
2699 Male, age 18, unknown 104.6
1916 Female, age 42, unknown 100.6
Superior colliculus
nTPM: 119.2
1995 Male, age 72, unknown 144.6
1913 Female, age 42, unknown 141.2
2587 Male, age 74, left hemisphere 122.8
1895 Male, age 76, right hemisphere 119.2
2087 Female, age 72, unknown 116.6
2261 Male, age 18, unknown 115.2
2668 Female, age 75, unknown 112.5
1839 Male, age 51, unknown 110.8
1796 Male, age 53, unknown 110.7
2664 Male, age 75, both hemispheres 98.2
Ventral tegmental area
nTPM: 112.6
2410 Female, age 72, unknown 127.1
2223 Female, age 72, unknown 115.7
2021 Male, age 53, unknown 114.4
1942 Male, age 51, unknown 110.5
1915 Female, age 42, unknown 104.7
2218 Male, age 76, both hemispheres 103.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 136.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.6
Samples: 139

Max nTPM: 232.0
Min nTPM: 82.9
Std nTPM: 31.3
Median nTPM: 132.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 232.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 227.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 221.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 215.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 214.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 200.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 191.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 190.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 190.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 185.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 184.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 178.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.2
FF:10158-103A5 76 years, female 178.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.2
Samples: 4

Max nTPM: 93.1
Min nTPM: 48.5
Sample A Female 93.1
Sample B Female 54.7
Sample C Male 80.6
Sample D Male 48.5
Midbrain
nTPM: 63.5
Samples: 4

Max nTPM: 74.8
Min nTPM: 49.9
Sample A Female 69.1
Sample B Female 60.0
Sample C Male 74.8
Sample D Male 49.9
Periaqueductal gray
nTPM: 50.8
Samples: 3

Max nTPM: 55.7
Min nTPM: 41.3
Sample B Female 55.5
Sample C Male 55.7
Sample D Male 41.3
Superior colliculi
nTPM: 71.9
Samples: 4

Max nTPM: 93.3
Min nTPM: 55.5
Sample A Female 72.8
Sample B Female 55.5
Sample C Male 93.3
Sample D Male 66.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 46.6
Min nTPM: 41.5
Sample A Male 44.7
Sample B Male 41.5
Sample C Female 41.7
Sample D Female 46.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68442967 Antisense, RP_050111_01_B04, Mouse strain C57BL/6J (56 days, male) 5.0
70918772 Antisense, RP_050712_04_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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