We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
EMC7
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • EMC7
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:79.4 nTPM
HPA Brain:61.7 nTPM
GTEx:79.4 nTPM
FANTOM5:107.3 Scaled Tags Per Million
Pig:73.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 51.6
1981 Female, age 72, midline 68.5
2048 Male, age 55, midline 55.2
2816 Male, age 47, midline 46.3
2565 Male, age 75, midline 45.4
2194 Female, age 79, both hemispheres 42.7
Cervical spinal cord, dorsal horn
nTPM: 61.7
2296 Male, age 66, both hemispheres 76.8
2173 Female, age 72, unknown 76.4
2069 Male, age 47, both hemispheres 70.2
1877 Male, age 55, unknown 54.0
2297 Male, age 75, both hemispheres 50.6
2721 Male, age 90, both hemispheres 42.2
Cervical spinal cord, ventral horn
nTPM: 54.8
2098 Female, age 72, unknown 76.2
2809 Male, age 90, both hemispheres 58.2
2480 Male, age 75, both hemispheres 55.2
2295 Male, age 66, both hemispheres 52.4
2068 Male, age 55, unknown 46.5
2820 Female, age 79, both hemispheres 40.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.4
Samples: 159

Max nTPM: 121.1
Min nTPM: 50.1
Std nTPM: 14.4
Median nTPM: 79.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 121.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 115.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 113.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 112.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 106.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 106.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 105.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 104.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 103.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 101.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 101.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 99.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 99.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 99.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 99.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 98.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 97.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 97.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 97.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 97.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 97.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 96.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 94.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 94.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 93.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 92.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 91.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 91.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 91.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 90.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 90.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 90.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 90.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 89.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 89.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 88.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 88.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 88.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 88.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 87.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 87.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 87.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 87.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 86.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 86.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 86.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 86.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 86.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 86.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 85.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 85.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 85.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 85.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 84.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 84.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 84.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 84.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 83.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 83.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 82.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 81.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 81.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 81.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 81.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 81.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 80.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 80.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 80.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 80.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 80.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 80.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 79.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 79.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 79.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 79.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 79.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 78.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 78.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 78.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 77.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 77.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 77.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 77.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 77.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 76.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 76.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 75.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 75.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 75.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 75.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 75.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 75.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 74.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 74.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 73.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 73.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 73.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 73.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 72.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 71.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 71.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 70.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 70.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 70.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 69.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 69.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 69.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 68.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 68.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 68.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 68.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 67.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 67.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 67.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 67.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 66.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 66.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 66.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 65.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 65.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 64.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 64.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 64.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 63.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 63.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 62.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 62.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 62.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 62.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 62.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 62.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 60.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 60.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 59.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 58.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 58.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 57.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 54.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 54.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 53.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 52.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 52.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 51.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 51.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 50.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 107.3
FF:10181-103D1 60 years, female 122.5
FF:10159-103A6 76 years, female 92.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 66.7
Samples: 4

Max nTPM: 70.6
Min nTPM: 63.8
Sample A Female 70.6
Sample B Female 64.1
Sample C Male 63.8
Sample D Male 68.1
Ventral spinal cord
nTPM: 73.5
Samples: 4

Max nTPM: 79.3
Min nTPM: 68.9
Sample A Female 69.6
Sample B Female 79.3
Sample C Male 76.0
Sample D Male 68.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org