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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:241.9 nTPM
HPA Brain:264.0 nTPM
GTEx:241.9 nTPM
FANTOM5:183.0 Scaled Tags Per Million
Pig:562.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 229.5
1981 Female, age 72, midline 273.0
2048 Male, age 55, midline 229.2
2565 Male, age 75, midline 222.8
2194 Female, age 79, both hemispheres 221.2
2816 Male, age 47, midline 201.1
Cervical spinal cord, dorsal horn
nTPM: 264.0
2173 Female, age 72, unknown 324.9
2296 Male, age 66, both hemispheres 304.0
2069 Male, age 47, both hemispheres 290.9
2297 Male, age 75, both hemispheres 241.8
1877 Male, age 55, unknown 237.7
2721 Male, age 90, both hemispheres 184.5
Cervical spinal cord, ventral horn
nTPM: 228.7
2480 Male, age 75, both hemispheres 267.4
2809 Male, age 90, both hemispheres 242.9
2098 Female, age 72, unknown 242.2
2295 Male, age 66, both hemispheres 213.2
2068 Male, age 55, unknown 206.7
2820 Female, age 79, both hemispheres 199.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 241.9
Samples: 159

Max nTPM: 491.1
Min nTPM: 149.9
Std nTPM: 48.4
Median nTPM: 237.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 491.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 424.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 380.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 354.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 350.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 331.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 319.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 314.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 314.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 313.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 309.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 302.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 299.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 298.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 296.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 293.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 293.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 292.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 292.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 292.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 287.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 286.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 284.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 283.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 282.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 281.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 281.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 280.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 280.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 279.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 278.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 276.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 275.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 275.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 274.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 274.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 274.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 273.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 271.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 271.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 270.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 269.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 268.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 265.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 264.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 263.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 261.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 260.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 259.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 257.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 257.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 256.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 255.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 254.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 253.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 252.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 251.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 251.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 251.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 251.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 250.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 249.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 249.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 249.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 248.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 247.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 246.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 245.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 244.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 243.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 243.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 242.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 242.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 240.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 240.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 239.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 239.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 238.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 238.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 237.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 236.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 235.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 234.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 233.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 233.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 232.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 231.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 231.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 231.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 230.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 229.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 229.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 228.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 227.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 227.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 227.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 227.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 226.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 225.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 225.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 224.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 223.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 223.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 223.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 223.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 222.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 222.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 222.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 221.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 219.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 218.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 218.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 217.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 217.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 215.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 213.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 212.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 212.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 210.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 209.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 208.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 206.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 204.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 204.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 204.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 203.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 202.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 202.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 201.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 200.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 199.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 197.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 197.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 196.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 195.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 195.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 193.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 193.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 192.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 192.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 190.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 189.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 186.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 186.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 186.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 185.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 184.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 182.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 182.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 181.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 174.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 169.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 166.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 161.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 160.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 158.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 154.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 149.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 183.0
FF:10181-103D1 60 years, female 194.9
FF:10159-103A6 76 years, female 171.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

562.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 513.2
Samples: 4

Max nTPM: 530.0
Min nTPM: 489.0
Sample A Female 530.0
Sample B Female 519.6
Sample C Male 489.0
Sample D Male 514.2
Ventral spinal cord
nTPM: 562.8
Samples: 4

Max nTPM: 597.1
Min nTPM: 530.0
Sample A Female 534.6
Sample B Female 597.1
Sample C Male 530.0
Sample D Male 589.3

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