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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1916.8 nTPM
GTEx:1916.8 nTPM
FANTOM5:170.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047103
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1916.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1916.8
Samples: 156

Max nTPM: 4970.4
Min nTPM: 1084.2
Std nTPM: 517.6
Median nTPM: 1874.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4970.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 3799.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3469.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 3468.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3070.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3023.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2997.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2700.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2675.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2661.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2583.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2582.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2483.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2444.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2429.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2407.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2385.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2372.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2360.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2358.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2347.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2333.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2319.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2302.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2298.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2289.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2283.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2278.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2278.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2268.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2258.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2241.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2221.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2220.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2206.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2200.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2194.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2153.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2150.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2149.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2133.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2120.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2118.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2117.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2103.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2097.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2086.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2077.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2068.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2063.0
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2045.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2045.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2024.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2006.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2001.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1989.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1982.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1975.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1966.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1965.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1953.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1953.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1947.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1946.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1946.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1943.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1932.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1929.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1919.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1913.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1912.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1911.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1908.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1908.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1907.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1896.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1884.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1882.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1866.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1863.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1861.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1855.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1847.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1832.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1824.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1804.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1798.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1798.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1791.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1772.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1753.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1753.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1747.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1745.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1736.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1723.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1722.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1719.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1709.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1687.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1684.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1680.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1678.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 1667.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1665.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1648.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1639.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1629.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1628.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1626.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1622.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1621.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1605.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1582.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1582.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1567.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1558.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 1539.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1538.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1531.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1521.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1509.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1506.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1496.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1496.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1495.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1491.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1479.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1478.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1464.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1452.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1452.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1446.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1445.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1441.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1438.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1417.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1400.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1398.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1391.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1389.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1361.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1353.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1353.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1321.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1317.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1308.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1301.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1291.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1289.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1254.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1240.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1240.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1206.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1149.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1084.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

170.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 170.7
FF:10204-103F6 68 years, female 170.7

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