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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:423.9 nTPM
HPA Brain:163.8 nTPM
GTEx:423.9 nTPM
FANTOM5:152.0 Scaled Tags Per Million
Pig:67.0 nTPM
Mouse:95.9 nTPM
Allen mouse:0.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.8
Sample id Sample description nTPM
Amygdala
nTPM: 163.8
2695 Female, age 67, right hemisphere 199.4
1987 Female, age 91, left hemisphere 182.4
2814 Male, age 76, right hemisphere 156.9
2514 Male, age 75, right hemisphere 156.5
2517 Female, age 94, left hemisphere 123.9
Basal amygdala
nTPM: 127.9
2609 Male, age 75, right hemisphere 157.1
2110 Male, age 80, left hemisphere 141.8
1955 Male, age 76, both hemispheres 126.3
2685 Female, age 94, left hemisphere 125.9
2243 Female, age 91, right hemisphere 119.7
2827 Female, age 67, right hemisphere 96.5
Central amygdala
nTPM: 140.2
2515 Male, age 75, right hemisphere 159.0
2826 Female, age 94, left hemisphere 155.1
1905 Male, age 76, both hemispheres 137.5
2701 Female, age 91, right hemisphere 127.0
2239 Male, age 80, left hemisphere 122.4
Corticomedial amygdala
nTPM: 128.0
2428 Male, age 75, right hemisphere 152.1
2829 Male, age 80, left hemisphere 151.8
2429 Female, age 94, left hemisphere 130.3
2242 Female, age 91, right hemisphere 127.3
2240 Male, age 76, both hemispheres 126.3
2535 Female, age 67, right hemisphere 79.9
Lateral amygdala
nTPM: 123.2
2516 Male, age 75, right hemisphere 144.9
1883 Male, age 76, both hemispheres 136.9
2256 Male, age 80, left hemisphere 124.2
2534 Female, age 94, left hemisphere 118.2
2830 Female, age 67, right hemisphere 114.5
2255 Female, age 91, right hemisphere 100.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 423.9
Samples: 152

Max nTPM: 984.0
Min nTPM: 217.6
Std nTPM: 127.6
Median nTPM: 403.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 984.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 923.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 825.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 752.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 739.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 705.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 688.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 679.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 668.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 668.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 644.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 630.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 626.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 625.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 592.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 591.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 587.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 587.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 576.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 562.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 557.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 538.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 534.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 528.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 527.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 521.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 511.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 510.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 489.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 486.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 480.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 474.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 472.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 471.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 470.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 470.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 468.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 461.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 460.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 460.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 459.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 454.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 454.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 452.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 451.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 450.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 448.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 445.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 438.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 438.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 436.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 435.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 432.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 432.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 431.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 429.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 429.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 425.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 424.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 424.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 421.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 420.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 415.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 414.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 414.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 414.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 413.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 411.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 408.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 408.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 408.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 407.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 407.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 407.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 405.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 404.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 402.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 398.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 397.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 396.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 396.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 393.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 393.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 392.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 391.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 390.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 387.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 385.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 380.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 378.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 374.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 374.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 372.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 371.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 371.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 371.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 370.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 370.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 368.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 367.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 367.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 366.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 366.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 365.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 363.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 359.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 356.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 356.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 355.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 351.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 349.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 347.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 345.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 338.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 337.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 337.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 334.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 334.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 333.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 330.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 330.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 330.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 327.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 327.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 324.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 320.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 319.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 318.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 317.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 315.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 309.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 309.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 303.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 300.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 299.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 298.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 298.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 296.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 294.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 293.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 291.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 284.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 272.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 269.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 268.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 263.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 247.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 244.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 240.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 237.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 225.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 217.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 152.0
FF:10151-102I7 76 years, female 152.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.0
Pig sample Sample description nTPM
Amygdala
nTPM: 67.0
Samples: 4

Max nTPM: 77.4
Min nTPM: 49.7
Sample A Female 73.9
Sample B Female 77.4
Sample C Male 67.1
Sample D Male 49.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.9
Samples: 4

Max nTPM: 102.9
Min nTPM: 88.9
Sample A Male 93.9
Sample B Male 88.9
Sample C Female 97.8
Sample D Female 102.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.8
69540611 Antisense, RP_050426_02_B02, Mouse strain C57BL/6J (56 days, male) 1.0
73992715 Antisense, RP_051214_01_E07, Mouse strain C57BL/6J (56 days, male) 0.5

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