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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:440.5 nTPM
HPA Brain:221.1 nTPM
GTEx:440.5 nTPM
FANTOM5:195.8 Scaled Tags Per Million
Pig:184.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 202.7
1981 Female, age 72, midline 269.2
2048 Male, age 55, midline 223.3
2565 Male, age 75, midline 188.0
2816 Male, age 47, midline 167.3
2194 Female, age 79, both hemispheres 165.8
Cervical spinal cord, dorsal horn
nTPM: 198.3
2173 Female, age 72, unknown 269.1
2069 Male, age 47, both hemispheres 224.6
2296 Male, age 66, both hemispheres 217.5
1877 Male, age 55, unknown 194.3
2721 Male, age 90, both hemispheres 161.7
2297 Male, age 75, both hemispheres 122.8
Cervical spinal cord, ventral horn
nTPM: 221.1
2098 Female, age 72, unknown 372.5
2809 Male, age 90, both hemispheres 309.2
2295 Male, age 66, both hemispheres 171.4
2480 Male, age 75, both hemispheres 163.6
2068 Male, age 55, unknown 162.0
2820 Female, age 79, both hemispheres 147.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

440.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 440.5
Samples: 159

Max nTPM: 1483.4
Min nTPM: 234.4
Std nTPM: 153.4
Median nTPM: 403.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1483.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1214.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 917.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 842.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 833.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 725.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 720.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 684.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 656.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 648.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 641.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 602.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 598.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 591.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 589.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 586.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 571.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 565.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 564.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 556.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 550.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 550.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 550.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 537.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 536.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 534.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 523.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 519.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 518.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 518.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 514.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 512.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 510.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 506.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 505.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 504.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 501.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 490.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 488.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 487.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 484.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 484.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 481.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 479.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 479.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 476.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 475.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 475.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 473.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 470.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 468.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 467.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 462.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 457.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 456.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 453.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 450.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 448.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 448.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 446.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 444.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 443.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 437.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 435.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 435.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 434.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 433.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 429.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 423.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 422.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 420.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 418.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 411.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 409.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 409.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 408.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 405.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 404.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 404.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 403.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 403.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 402.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 401.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 399.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 396.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 395.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 394.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 394.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 393.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 391.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 391.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 391.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 387.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 387.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 386.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 386.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 383.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 383.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 383.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 379.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 373.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 373.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 370.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 369.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 369.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 365.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 365.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 361.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 359.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 358.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 358.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 357.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 357.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 356.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 355.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 354.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 353.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 350.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 350.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 349.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 349.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 343.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 343.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 343.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 341.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 341.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 340.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 339.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 337.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 337.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 336.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 335.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 334.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 334.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 330.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 330.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 329.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 327.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 324.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 323.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 323.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 323.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 322.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 322.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 317.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 314.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 311.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 309.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 305.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 300.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 299.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 290.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 284.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 269.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 264.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 256.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 249.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 247.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 234.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

195.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 195.8
FF:10159-103A6 76 years, female 210.3
FF:10181-103D1 60 years, female 181.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 184.3
Samples: 4

Max nTPM: 285.1
Min nTPM: 132.3
Sample A Female 132.3
Sample B Female 172.5
Sample C Male 285.1
Sample D Male 147.4
Ventral spinal cord
nTPM: 175.5
Samples: 4

Max nTPM: 216.9
Min nTPM: 138.5
Sample A Female 138.5
Sample B Female 183.5
Sample C Male 216.9
Sample D Male 163.2

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