BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:219.6 nTPM
HPA Brain:91.9 nTPM
GTEx:219.6 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:123.7 nTPM
Mouse:181.5 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021381
Glial cells Medium
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 91.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 76.1
2846 Female, age 79, unknown 84.9
1857 Female, age 85, left hemisphere 81.2
2288 Male, age 75, left hemisphere 80.7
2481 Female, age 94, left hemisphere 79.4
2290 Female, age 72, unknown 79.3
1854 Male, age 80, left hemisphere 77.0
1781 Male, age 74, unknown 69.1
2289 Male, age 61, right hemisphere 57.3
Globus pallidus, externus
nTPM: 89.2
1996 Male, age 80, right hemisphere 112.3
2772 Female, age 79, unknown 104.2
2395 Male, age 75, both hemispheres 93.0
2646 Male, age 61, right hemisphere 76.2
2567 Female, age 72, unknown 60.1
Globus pallidus, internus
nTPM: 91.9
2287 Male, age 75, right hemisphere 113.5
2037 Male, age 80, right hemisphere 104.0
2778 Female, age 91, both hemispheres 95.9
1818 Male, age 74, unknown 90.1
2483 Female, age 94, right hemisphere 86.9
2111 Female, age 85, right hemisphere 80.2
2566 Female, age 72, unknown 72.9
Nucleus accumbens
nTPM: 72.8
2286 Male, age 75, left hemisphere 83.4
2698 Female, age 72, unknown 83.4
2391 Female, age 94, left hemisphere 82.8
1856 Female, age 91, right hemisphere 71.7
1806 Female, age 85, left hemisphere 69.7
1783 Male, age 74, unknown 68.0
2732 Male, age 80, right hemisphere 61.8
2824 Male, age 61, right hemisphere 61.5
Nucleus basalis of Meynert
nTPM: 74.3
2821 Male, age 75, both hemispheres 84.3
2569 Male, age 61, both hemispheres 82.2
2393 Male, age 80, right hemisphere 70.7
2484 Female, age 94, left hemisphere 60.1
Nucleus of the diagonal band
nTPM: 69.7
1812 Female, age 91, both hemispheres 83.9
2775 Male, age 80, right hemisphere 76.3
2029 Male, age 61, right hemisphere 71.3
2195 Female, age 85, both hemispheres 67.4
1979 Male, age 74, unknown 49.3
Putamen
nTPM: 68.1
2482 Female, age 94, left hemisphere 78.8
1937 Female, age 91, right hemisphere 73.3
2466 Female, age 79, unknown 71.7
1838 Male, age 80, right hemisphere 70.5
2647 Male, age 75, left hemisphere 62.5
1829 Male, age 74, unknown 61.9
2489 Female, age 72, unknown 57.8
Septal nuclei
nTPM: 67.4
2031 Female, age 72, unknown 82.5
1960 Male, age 74, unknown 74.9
2009 Female, age 91, both hemispheres 68.7
2629 Female, age 94, right hemisphere 64.5
2059 Female, age 85, both hemispheres 63.2
2394 Male, age 61, left hemisphere 63.2
2199 Male, age 80, right hemisphere 55.0
Stria terminalis, bed nucleus
nTPM: 58.0
1974 Female, age 91, both hemispheres 67.9
2201 Male, age 74, unknown 57.0
2486 Female, age 94, both hemispheres 48.9

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 219.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 194.0
Samples: 246

Max nTPM: 461.4
Min nTPM: 95.3
Std nTPM: 51.9
Median nTPM: 184.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 461.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 399.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 380.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 373.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 368.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 345.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 317.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 311.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 308.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 301.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 300.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 189.6
Samples: 246

Max nTPM: 677.6
Min nTPM: 78.7
Std nTPM: 65.2
Median nTPM: 178.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 677.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 498.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 384.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 348.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 339.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 314.7
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 313.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 310.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 309.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 306.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 305.4
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Brain - Putamen (basal ganglia)
Average nTPM: 219.6
Samples: 205

Max nTPM: 608.7
Min nTPM: 99.9
Std nTPM: 56.4
Median nTPM: 213.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 608.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 386.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 354.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 351.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 347.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 333.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 326.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 321.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 311.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 309.4
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 307.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 90.9
FF:10164-103B2 76 years, female 90.9
Nucleus accumbens
Scaled Tags Per Million: 81.2
FF:10037-101F1 23-56 years, mixed 81.2
Putamen
Scaled Tags Per Million: 86.3
FF:10176-103C5 60 years, female 86.3
Globus pallidus
Scaled Tags Per Million: 101.2
FF:10175-103C4 60 years, female 113.7
FF:10161-103A8 76 years, female 88.6

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 123.7
Pig sample Sample description nTPM
Caudate
nTPM: 113.5
Samples: 4

Max nTPM: 138.8
Min nTPM: 94.3
Sample A Female 94.3
Sample B Female 125.2
Sample C Male 138.8
Sample D Male 95.6
Putamen
nTPM: 123.7
Samples: 4

Max nTPM: 170.7
Min nTPM: 90.8
Sample A Female 90.8
Sample B Female 99.4
Sample C Male 170.7
Sample D Male 133.9
Septum
nTPM: 81.1
Samples: 4

Max nTPM: 89.5
Min nTPM: 66.5
Sample A Female 89.5
Sample B Female 86.0
Sample C Male 66.5
Sample D Male 82.4
Ventral pallidum
nTPM: 89.3
Samples: 4

Max nTPM: 104.2
Min nTPM: 83.0
Sample A Female 85.0
Sample B Female 104.2
Sample C Male 83.0
Sample D Male 84.9

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 181.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 176.3
Samples: 4

Max nTPM: 185.5
Min nTPM: 163.4
Sample A Male 185.5
Sample B Male 185.0
Sample C Female 171.2
Sample D Female 163.4
Septum
nTPM: 181.6
Samples: 4

Max nTPM: 205.9
Min nTPM: 152.3
Sample A Male 152.3
Sample B Male 189.0
Sample C Female 205.9
Sample D Female 179.0
Ventral forebrain
nTPM: 175.8
Samples: 4

Max nTPM: 212.5
Min nTPM: 162.0
Sample A Male 165.4
Sample B Male 162.0
Sample C Female 212.5
Sample D Female 163.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
100144717 Antisense, RP_110421_03_D10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
100144717 Antisense, RP_110421_03_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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